Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8m19
         (474 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9LJL0 Cluster: Arabidopsis thaliana genomic DNA, chrom...    33   3.2  
UniRef50_Q2QPR8 Cluster: Retrotransposon protein, putative, Ty3-...    32   5.6  
UniRef50_A6MD05 Cluster: YY1 protein; n=1; Oryza brachyantha|Rep...    32   7.4  
UniRef50_Q7RRP3 Cluster: Putative uncharacterized protein PY0067...    32   7.4  
UniRef50_Q9UJ78 Cluster: Zinc finger MYM-type protein 5; n=22; E...    32   7.4  
UniRef50_Q9JKP9 Cluster: Testis-type galactosyl receptor; n=1; R...    31   9.8  
UniRef50_Q3T2M5 Cluster: Cassette chromosome recombinase C; n=15...    31   9.8  

>UniRef50_Q9LJL0 Cluster: Arabidopsis thaliana genomic DNA,
           chromosome 3, P1 clone: MVI11; n=3; Arabidopsis
           thaliana|Rep: Arabidopsis thaliana genomic DNA,
           chromosome 3, P1 clone: MVI11 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 1566

 Score = 33.1 bits (72), Expect = 3.2
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 130 LNRSFTLLLSILGLAFRVPTWRQSKLCS-ITKMERWRSRTEL*IQHNTKRS 279
           L  SF L + +L LA  + +W+ SKLC+ I + + W SR        T+ S
Sbjct: 766 LASSFCLYVHLLPLAIHLDSWQYSKLCNLIEEAKNWLSRMAANTAEQTEES 816


>UniRef50_Q2QPR8 Cluster: Retrotransposon protein, putative,
           Ty3-gypsy subclass; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Retrotransposon protein, putative,
           Ty3-gypsy subclass - Oryza sativa subsp. japonica (Rice)
          Length = 795

 Score = 32.3 bits (70), Expect = 5.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 371 MQYCDYGYKEDYYEIRNSYPTDNAINN 451
           ++Y D+GY+ DY    +SY  D ++NN
Sbjct: 202 LEYDDFGYRYDYANFDDSYKNDYSVNN 228


>UniRef50_A6MD05 Cluster: YY1 protein; n=1; Oryza brachyantha|Rep:
           YY1 protein - Oryza brachyantha
          Length = 177

 Score = 31.9 bits (69), Expect = 7.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  WEFKCNVQMEFILRKTLKIKCSAPFHCGQLNR 138
           W+F+C+ +    +R   K+K SAPF  G+  R
Sbjct: 128 WQFRCHYKNSCKIRNLYKVKVSAPFDQGKTKR 159


>UniRef50_Q7RRP3 Cluster: Putative uncharacterized protein PY00675;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY00675 - Plasmodium yoelii yoelii
          Length = 498

 Score = 31.9 bits (69), Expect = 7.4
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 338 EDVSSNDACAQMQYCDY-GYKEDYYEIRNSYPTDNAINNI*NH 463
           ED  S+D   ++  C+Y  YKE+ Y  +NSY   N+I +I N+
Sbjct: 410 EDSDSSDEDKKINNCEYIDYKENSYYKKNSYYKKNSIISIINN 452


>UniRef50_Q9UJ78 Cluster: Zinc finger MYM-type protein 5; n=22;
           Eutheria|Rep: Zinc finger MYM-type protein 5 - Homo
           sapiens (Human)
          Length = 382

 Score = 31.9 bits (69), Expect = 7.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 60  CSNGIHIKKNTKNKMLCTISLRPVESFIYITFINFRL 170
           C N  ++KK   NK  CTI  +  E +I+I  + FRL
Sbjct: 322 CENNWNLKKGVFNKSRCTICSKLAEVWIFIPKLLFRL 358


>UniRef50_Q9JKP9 Cluster: Testis-type galactosyl receptor; n=1;
           Rattus norvegicus|Rep: Testis-type galactosyl receptor -
           Rattus norvegicus (Rat)
          Length = 246

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 249 LGSGAPTFHLCDTAQFRLPPCWNA 178
           LG G+P   L  TA++R+P CW++
Sbjct: 214 LGMGSPGLRLTSTAKWRMPICWSS 237


>UniRef50_Q3T2M5 Cluster: Cassette chromosome recombinase C; n=15;
           Staphylococcus|Rep: Cassette chromosome recombinase C -
           Staphylococcus aureus
          Length = 559

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 272 LVLCWIYNSVLERQRSIFVILHSLDCRHVGTRKAKPKIDKSNVN 141
           +VL W  N +    R +F I+H      VG +     ID SN +
Sbjct: 76  MVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNAS 119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 379,416,107
Number of Sequences: 1657284
Number of extensions: 6659614
Number of successful extensions: 15053
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15052
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)