Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8m19
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0676 - 27187778-27188316,27188441-27188530,27189249-271894...    28   3.3  
01_02_0013 + 10162478-10163581                                         27   5.8  
05_04_0191 + 18927302-18927707,18928747-18928979,18929062-189291...    27   7.7  

>04_04_0676 -
           27187778-27188316,27188441-27188530,27189249-27189480,
           27189569-27189899,27190369-27190591,27190772-27191132
          Length = 591

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 279 ASLGVMLDLQLGSGAPTFHLCDTAQFRLPPCWNAK 175
           ASLG++  L +       +LC  A+ RL P W AK
Sbjct: 333 ASLGIVASLLVAMLGQARYLCVIARARLVPAWLAK 367


>01_02_0013 + 10162478-10163581
          Length = 367

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 176 FAFQHGGSLNCAVSQRWNVGAPEPS 250
           F   +GGSL+ A+S+R   G PEP+
Sbjct: 149 FEHMNGGSLDRALSRRGGRGLPEPA 173


>05_04_0191 +
           18927302-18927707,18928747-18928979,18929062-18929127,
           18929262-18929340,18929935-18930014,18930099-18930122,
           18930254-18930375,18930902-18931109,18931960-18932006,
           18932914-18932998,18933292-18933355,18933488-18933609
          Length = 511

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 296 CLGFA*LLLVLCWIYNSVLERQRSIFVILH 207
           CL FA    VLCW+Y +V E +  I   +H
Sbjct: 454 CLAFADE--VLCWLYGTVRENEDYILQFVH 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,142,797
Number of Sequences: 37544
Number of extensions: 176200
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)