Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8m17
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.44 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.44 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.44 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.4  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   9.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.4  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 368 ALKVSPAHFESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNKMNYGVNINEYEKQLQ 547
           A+  +    +++SN  P F+   +    +  ++++   +     + +Y +N N Y  ++ 
Sbjct: 258 AIASATVTIQNVSNTIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMYPGEMY 317

Query: 548 RYQH-TLNIAQTEKKN 592
             +H T+N AQ   +N
Sbjct: 318 NPEHTTVNEAQPYVRN 333


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 368 ALKVSPAHFESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNKMNYGVNINEYEKQLQ 547
           A+  +    +++SN  P F+   +    +  ++++   +     + +Y +N N Y  ++ 
Sbjct: 206 AIASATVTIQNVSNTIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMYPGEMY 265

Query: 548 RYQH-TLNIAQTEKKN 592
             +H T+N AQ   +N
Sbjct: 266 NPEHTTVNEAQPYVRN 281


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 368 ALKVSPAHFESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNKMNYGVNINEYEKQLQ 547
           A+  +    +++SN  P F+   +    +  ++++   +     + +Y +N N Y  ++ 
Sbjct: 389 AIASATVTIQNVSNTIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMYPGEMY 448

Query: 548 RYQH-TLNIAQTEKKN 592
             +H T+N AQ   +N
Sbjct: 449 NPEHTTVNEAQPYVRN 464


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/43 (18%), Positives = 19/43 (44%)
 Frame = +2

Query: 362 QNALKVSPAHFESISNNSPTFSLTSNNQELDDLELSKSIYSTC 490
           + A  VSP  ++    N+P   +      +++++ +   Y  C
Sbjct: 733 KRATGVSPGDYKDFKPNNPDIKVEDGTLTINNIQKTNEGYYLC 775


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = -1

Query: 275 CHRSIVE*HHFHTH 234
           CH+     HH  TH
Sbjct: 15  CHKRFTRDHHLKTH 28


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = -1

Query: 275 CHRSIVE*HHFHTH 234
           CH+     HH  TH
Sbjct: 168 CHKRFTRDHHLKTH 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,802
Number of Sequences: 336
Number of extensions: 2580
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)