Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8m14
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    31   0.18 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    29   0.43 
SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase |Schizosac...    29   0.56 
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    29   0.74 
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    28   1.3  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   2.3  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    27   2.3  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    27   3.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.2  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.9  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   6.9  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   9.1  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.1  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 21/93 (22%), Positives = 41/93 (44%)
 Frame = +1

Query: 304 NDGISQNHENKFGKAQTMSGHAGKYTPSESVPNLTNRFASFSTSETPSTANNYNSQYHLD 483
           N+  + N+E+   K  ++SG A  +  S    N  N   S + +   S  NN   Q H  
Sbjct: 532 NNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNN---QQHQQ 588

Query: 484 TNVASQSVLNDIDESFSRQTSYRYYRHQQGRSY 582
           ++ + Q + +    S S  ++ + Y +   ++Y
Sbjct: 589 SSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNY 621


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 8/159 (5%)
 Frame = +1

Query: 94   ALNQLSSSLAVLNNNKKNDLREMISRKGQKAVNEGVVGKYIKKDTPSGLPIINVWT---- 261
            AL +  SSL ++ N+K     ++     + A   GV          +   I NV T    
Sbjct: 1741 ALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAKTRGVWRDLSANQFKNSKSISNVSTHLAS 1800

Query: 262  TEYNKRPRSQPF-GVNDGISQNHE--NKFGKAQTMSGHAGKYTPSESVPNLTNRFASFST 432
               N   R  P    + GI +  +  +K  K   +   A     +E   ++ N+ A    
Sbjct: 1801 NNLNLASRDTPIKSPSVGICEEKQEAHKVKKRHNIDS-ANLSRGTERDEDIPNKRAKNKV 1859

Query: 433  SETPSTANNYNSQYHLDTNVAS-QSVLNDIDESFSRQTS 546
            S   + A+N  ++  LD + +S Q VLN IDES   Q S
Sbjct: 1860 STDQTAADNKVTKPRLDESSSSKQDVLNKIDESEIEQAS 1898


>SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 159

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +1

Query: 187 VNEGVVGKYIKKDTPSGLPIINVWTTEYNKRPRSQPFGVNDGISQNHENKFGKAQTMSGH 366
           ++E VV   ++    SG+P+I    T  N+       G+N G   NH N +G A    G 
Sbjct: 98  ISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYRAGLNGG--HNHGNDWGSAAVEMGL 155

Query: 367 AGKY 378
              Y
Sbjct: 156 KALY 159


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 322 NHENKFGKAQTMSGHAGKYTPSESVPNLTNRFASFSTSETPSTANNYNS 468
           NHEN F   Q++S  A  +  SE V +  N     S   TP   +  NS
Sbjct: 47  NHENSFASQQSLSSSA--FDDSEIVTSTANSTVVSSALSTPKIDDAQNS 93


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 334 KFGKAQTMSGHAGKYTPSESVPNLTNRFASFSTSETPSTANNYNSQ 471
           K    +T      K    E+ PN  N  +S+ TS +PST  + +SQ
Sbjct: 261 KVDNTETKFSKKTKNINDENFPNPFNVISSYETSASPSTVIDQSSQ 306


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 364  HAGKYTPSESVPNLTNRFASFSTSETPSTANNYNSQYHLDTNVASQSVLNDIDE-SFSRQ 540
            H G Y PS+ + N     A  S SE      NY S +    ++    +  +I++    R+
Sbjct: 931  HIGYYKPSKIIANRITSLARASLSELLKDTPNYKSIFKSSLDIYHVVIDVNINKLPMYRE 990

Query: 541  TSYRYYRHQQGRS 579
            ++   Y++ Q  S
Sbjct: 991  SNLTKYKNLQNMS 1003


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +1

Query: 256 WTTEYNKRPRSQPFGVNDGISQNHENKFGKAQTMSGHAGKYTPSESVPNLTNRFASFSTS 435
           ++T   KRPR QP    D  + N   +       SGH+  ++  +  P +      F  S
Sbjct: 108 FSTPAAKRPRRQPSSFLDVHASNTRKRGSPDTPDSGHSTPHSKGDVHPGMPQHNTRFKQS 167

Query: 436 ETPSTAN 456
               ++N
Sbjct: 168 SREFSSN 174


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +1

Query: 301 VNDGISQNHENKFGKAQTMSGHA--GKYTPSESVPNLTNRFASFSTSETPSTANNYNSQY 474
           V++ + +N +++   A+ +S H    KY P+ SV  +   +A +  SE    A  YNS  
Sbjct: 235 VSNCLKKNPKDR-ATAEYLSKHKFIKKYCPNTSVKEVVASYAKWKESELLPEATPYNSTM 293

Query: 475 HLDTNVASQSV 507
               N   + V
Sbjct: 294 GNSANTIDEVV 304


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +1

Query: 337 FGKAQTMSGHAGKYTPSESVPNLTNRFASFSTSETPSTANNYNSQYHLDTNVASQSVLND 516
           +G+A    G    Y    + P  ++  + FS S TPS  N+Y+S     ++ A+  + + 
Sbjct: 60  YGRAAETGGTPTYY--GYATPTSSSEPSIFSESATPSETNSYSSPVSSYSDPATSQLPS- 116

Query: 517 IDESFSRQTSYRY 555
              SF   TS  Y
Sbjct: 117 -STSFFSPTSSEY 128


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 397 PNLTNRFASFSTSETPSTANNYNSQ 471
           P+  NR+  ++ S TP+  NN N +
Sbjct: 304 PSTNNRYRGWNGSPTPAAGNNTNGR 328


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 376 YTPSESVPNLTNRFASFSTSETPSTANN 459
           YTPS    + T     F   ETP+T NN
Sbjct: 109 YTPSTRPASHTEAPNDFENHETPNTENN 136


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 379 TPSESVPNLTNRFASFSTSETPSTANNYNSQYHLDTNVA--SQSVLNDIDESFSRQTSYR 552
           TPS + PN +N F S  T  T S   + ++Q H D   +    S    +D+S   QT + 
Sbjct: 61  TPSRNTPNSSNGFPS-ETLVTSSA--HCSTQPHKDEAYSHHGYSSTMALDDSSLAQTYHE 117

Query: 553 YYRHQQGRS 579
           Y     G S
Sbjct: 118 YEEGTSGNS 126


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/56 (21%), Positives = 28/56 (50%)
 Frame = +1

Query: 379 TPSESVPNLTNRFASFSTSETPSTANNYNSQYHLDTNVASQSVLNDIDESFSRQTS 546
           TP  S PN  +   +++   +  +  + +S YH  ++V + +  + I  + ++ TS
Sbjct: 559 TPLSSAPNPPSVMPTYARKTSSHSERSSHSSYHNSSHVPTAAFNSPIMRTSTKSTS 614


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +1

Query: 385 SESVPNLTNRFASFS-TSETP-STANNYNSQYHLDTNVASQSVLNDIDESFSRQTSYRYY 558
           S ++PNL+NR + +S  +  P   A++ N +     ++ + SV+N I++ + R      Y
Sbjct: 45  STALPNLSNRLSPYSHRNYLPIPEADSRNLEVLNSISLTTGSVVNQINKLYQRSCDNANY 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,613
Number of Sequences: 5004
Number of extensions: 46520
Number of successful extensions: 180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)