Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8m14
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43... 30 1.3
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 30 1.8
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 29 2.3
07_03_0172 + 14697741-14697869,14697878-14697998,14698134-146982... 28 5.4
05_07_0105 - 27716126-27716218,27716548-27716658,27716764-277168... 28 7.1
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 28 7.1
01_06_0703 - 31326790-31326894,31327015-31327126,31327324-313274... 27 9.4
>06_01_0047 -
429838-429960,430413-430508,430589-430596,431088-431141,
431226-431274,431368-431466,431560-431639,431926-431989,
432082-432255,432342-432965,433046-433189,433262-433372,
433442-433498,433664-433798
Length = 605
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1
Query: 385 SESVPNLTNRFASFSTSETPSTANNYNSQYHLDTNVASQSVLNDIDES 528
SES+PN + + S+ + S + SQ HL NV S + LND+D S
Sbjct: 24 SESLPNNDDNYQCDSSDNSDSNHMDVPSQDHL--NVISTNDLNDMDVS 69
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 316 SQNHENKFGKAQTM---SGHAGKYTPSESVPNLTNRFASFSTSETPS 447
+Q ++ K GKA M S +AG TP ES+P +F+ PS
Sbjct: 1297 NQGNKMKQGKAGQMIKSSVYAGALTPKESIPREAKEVENFAEGSLPS 1343
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 23 LVPKPNKLQIICSTIGCYVMSVFKLS 100
L +PN L I C+ CY+ SV+ LS
Sbjct: 259 LARQPNSLVISCNLQACYISSVYSLS 284
>07_03_0172 +
14697741-14697869,14697878-14697998,14698134-14698226,
14700888-14700946,14701003-14701599,14702813-14703020,
14703102-14703178,14703263-14703302,14703413-14703473,
14704120-14704189,14705014-14705235
Length = 558
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 340 GKAQTMSGHAGKYTPSESVPNLTNRFASFSTSETPSTANNYNSQ 471
G Q+ +G G S+++ RF+S S++E + AN YNSQ
Sbjct: 199 GHFQSSTGSVGPLRSSQAI-----RFSSVSSNEQYTNANPYNSQ 237
>05_07_0105 -
27716126-27716218,27716548-27716658,27716764-27716815,
27716895-27717034,27717298-27717422,27717514-27717638,
27717853-27717898,27718374-27718947
Length = 421
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 412 RFASFSTSETPSTANNYNSQYHLDTNVASQSVLNDIDESFSRQTSYRYYRHQQ--GRSYI 585
RFA+ + S+++ N + ++ +S +L+ +S S+RY RH Q G+SY+
Sbjct: 140 RFAAAAAVPVASSSSGCNFTTVVGSSSSSSDLLSFQLDSIIGNCSFRYVRHGQNMGKSYV 199
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 430 TSETPSTANNYNSQYHLDT-NVASQSVLNDIDESFSRQTSYRYYRH 564
T +T + ++ + HLD + A + + D + S SR+ RY+RH
Sbjct: 229 TRDTEAENDSRSGSDHLDAISAAGEDDVEDAEPSNSRKRKKRYHRH 274
>01_06_0703 -
31326790-31326894,31327015-31327126,31327324-31327445,
31327573-31327658,31327783-31327901,31327991-31328053,
31328142-31328221,31328801-31328921,31329040-31329125,
31329318-31329413,31329510-31329584,31329869-31330210
Length = 468
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 43 IADYLQHNWMLRYVGF*ALNQLSSSLAVLNNNKKNDLREMISRKG 177
+ ++H +++++G A+ Q S + V+ K DLR+ +SRKG
Sbjct: 209 VLQLIRHPNVVQFLG--AVTQSSPMMIVMEFMPKGDLRKHLSRKG 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,316,120
Number of Sequences: 37544
Number of extensions: 253818
Number of successful extensions: 729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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