Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8m10
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.42 
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo...    28   0.97 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.7  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.7  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    27   1.7  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   3.9  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   5.2  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   6.9  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   6.9  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   9.1  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   9.1  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   9.1  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 327  RDSKDTESQWYFGRTLSPKSIIIGTRRKEVFGRCKKF*FQKAKTSRQRPKSRNWYAPC 500
            RDS   ++  +  ++ SP+ +II T  +    +C+ F         + P S  +YA C
Sbjct: 1946 RDSPAKQAPQF--QSKSPECVIISTMNRSCDSKCRYFLLTAIANQLRYPSSHTYYASC 2001


>SPAC9E9.14 |vps24||vacuolar sorting protein
           Vps24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +1

Query: 205 KKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKI 342
           K+   S+ L  S +L  ND+ A + + GT+  S + ++DVS ++++
Sbjct: 76  KRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRL 121


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 97  PICVIARQLLFKNIESIVTAKPNTVQT 177
           P  V+  +++FK  ES++  KPN VQ+
Sbjct: 771 PSIVLTSKVVFKIAESLILLKPNEVQS 797


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 116 DNCYLRILKALSQQNQILYKHIIVKRFYY 202
           D C++R+L A + Q+ ILY    VK  ++
Sbjct: 275 DPCHIRVLNANTDQSLILYTQSDVKNLHF 303


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 469 GQNLVTGMLHAMLLKTYADIAKELGVAPG 555
           GQ  + GMLHA L  +YA+ + +    PG
Sbjct: 467 GQPQIPGMLHASLSNSYAEPSTQNSFIPG 495


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +1

Query: 112 ARQLLFKNIESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGT 291
           +R  + K+I++   A  +  + YYS K+   K       +  S + L+ ++     L+G 
Sbjct: 204 SRSAIQKDIKAKERAVEHIAKKYYSSKITKEKVRWCLYSIADSNSYLRYNRDPIAKLIGL 263

Query: 292 V--HFSKQSIED 321
           V  +FS  +++D
Sbjct: 264 VEAYFSPDTVDD 275


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 321 CFRDSKDTESQWYFGRTLSPK-SIIIGTRRKEV 416
           CFR + +  S WY G+T +P+  I +GT   +V
Sbjct: 711 CFRVTMNENSVWY-GKTCNPQLHITLGTSSSDV 742


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 235 KSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 339
           K+ TL QN+ +   + +GT+ FS +S++ V   ++
Sbjct: 409 KTGTLTQNEMEMKKLHVGTMGFSAESMDVVQACIQ 443


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 280 LLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVS 390
           +LG++ FS+  ++ + E+V  L P  +L+E  RQ  S
Sbjct: 446 MLGSIGFSRLRVKMLRELVASLTP--VLLETRRQNAS 480


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 284 KRTTVACLSFCKSVADFGKCW 222
           K++ + C   C S+ DF K W
Sbjct: 324 KKSLILCYVQCPSIEDFNKIW 344


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 6   FDTT*NKFSSILQICDEIPVFINSEIKYEMPNMCN 110
           F +T   ++ +++ CD   + +NS  + E+P++ N
Sbjct: 40  FPSTNASYAPVIRSCDSSEIMVNSLPRGELPDLEN 74


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 275 SFFWVQCTSVNSLLKMFQR**RY*IPMVFW*NFVAKEYH 391
           S  W+ CT     LK F+   R+ IP +F+  +++  +H
Sbjct: 69  SISWIPCTCKILKLKEFELPDRFDIPNLFYDGWLSYVFH 107


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -1

Query: 292  LYPKERPWLVYHFAKV*QILVNAGIHHFSFVIEP 191
            LYP+E+   V+HF K   I    GI  FSFVI+P
Sbjct: 998  LYPEEKIVQVHHFHK--DIARIHGI-PFSFVIKP 1028


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,632
Number of Sequences: 5004
Number of extensions: 59208
Number of successful extensions: 167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)