Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8m10
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0367 - 24444268-24444393,24444524-24444635,24444721-244448...    63   2e-10
08_02_1466 + 27322340-27322610,27322907-27322995,27323276-273233...    43   2e-04
03_06_0451 + 34025048-34027099,34028210-34028242                       31   0.76 
01_06_1620 + 38697960-38698131,38698532-38700732                       28   5.4  
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205...    27   9.4  

>05_05_0367 -
           24444268-24444393,24444524-24444635,24444721-24444821,
           24445727-24445831,24445929-24446015,24446630-24446689,
           24446834-24446881,24447571-24447816
          Length = 294

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 40/120 (33%), Positives = 60/120 (50%)
 Frame = +1

Query: 274 VVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXXXXXXXXXAKNFDSKKL 453
           V ++GT H S++S + V  ++  L P  + +ELC  RV+             +  D  K 
Sbjct: 72  VYVVGTAHVSQESCDQVKAVIDYLKPQAVFLELCASRVAILTPQNLQVPTMNEMIDMWKK 131

Query: 454 KQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQ 633
           K+     N   G+L++  L   A +A +L V PG EFR A+ E     G K+ LGDRP+Q
Sbjct: 132 KK----MN-TFGILYSWFL---AKVASQLDVLPGAEFRVAFEEAMSYGG-KVILGDRPVQ 182


>08_02_1466 +
           27322340-27322610,27322907-27322995,27323276-27323368,
           27323515-27323613,27323763-27324017
          Length = 268

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 16/37 (43%), Positives = 27/37 (72%)
 Frame = +1

Query: 274 VVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQR 384
           V +LGT H S++S+ DV  +++ + P+ ++VELCR R
Sbjct: 51  VWILGTSHLSEESVADVERVLRAVRPDNVVVELCRSR 87


>03_06_0451 + 34025048-34027099,34028210-34028242
          Length = 694

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
 Frame = +1

Query: 94  CPICVIARQLLFKNIESIVTAKPNTVQTYYSQKVL----LRKKSDVSQHLPKSATLLQND 261
           C + ++ R       E+++ + P T      + +L     +K  D+++ + K    L   
Sbjct: 482 CVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPH 541

Query: 262 KQATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVE 369
             A+ VLL  +  + +   DVSE+ K +  N +  E
Sbjct: 542 DSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKE 577


>01_06_1620 + 38697960-38698131,38698532-38700732
          Length = 790

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 311 DCLLKCTVPKRTTVACLSFCKSVADFG 231
           DC++ C +  +  +  +SF   VADFG
Sbjct: 613 DCIIHCDIKPQNILLDMSFTPKVADFG 639


>03_01_0265 +
           2046918-2049102,2052385-2052452,2052542-2052652,
           2053164-2053250,2053476-2053684,2054115-2054340,
           2054473-2054510,2054657-2054714,2055363-2055662,
           2055832-2055903,2055988-2056112,2056240-2056312,
           2056417-2056521
          Length = 1218

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 226 HLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKILNPNG 357
           H+PKS+ LL      T  ++   H     +ED   I +  + NG
Sbjct: 129 HIPKSSPLLWLHLLLTAAVVAIAHLGISRMEDALRITRFRDGNG 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,063
Number of Sequences: 37544
Number of extensions: 320435
Number of successful extensions: 785
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)