Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8m10
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70854-4|AAP40536.1|  452|Caenorhabditis elegans Hypothetical pr...   108   3e-24
U70854-3|AAP40537.1|  450|Caenorhabditis elegans Hypothetical pr...   108   3e-24
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    32   0.39 
U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z29095-12|CAB54287.2|  414|Caenorhabditis elegans Hypothetical p...    27   8.4  
Z29095-11|CAB54286.2|  426|Caenorhabditis elegans Hypothetical p...    27   8.4  

>U70854-4|AAP40536.1|  452|Caenorhabditis elegans Hypothetical
           protein F38A5.2a protein.
          Length = 452

 Score =  108 bits (260), Expect = 3e-24
 Identities = 49/122 (40%), Positives = 75/122 (61%)
 Frame = +1

Query: 268 ATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXXXXXXXXXAKNFDSK 447
           +T+ L+GT HFSK+S EDVS  ++ + P+ +++ELC  R+S            AK+ +S+
Sbjct: 156 STIYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLNSQ 215

Query: 448 KLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRP 627
           K+ Q +K    + G+LH +LL   A + +EL +APGGEFR A+        C++ LGDRP
Sbjct: 216 KIIQTMKQNGAIQGILHVLLLSMSAHVTRELSMAPGGEFRAAHRAAVATENCRVVLGDRP 275

Query: 628 IQ 633
           IQ
Sbjct: 276 IQ 277


>U70854-3|AAP40537.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A5.2b protein.
          Length = 450

 Score =  108 bits (260), Expect = 3e-24
 Identities = 49/122 (40%), Positives = 75/122 (61%)
 Frame = +1

Query: 268 ATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXXXXXXXXXAKNFDSK 447
           +T+ L+GT HFSK+S EDVS  ++ + P+ +++ELC  R+S            AK+ +S+
Sbjct: 154 STIYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLNSQ 213

Query: 448 KLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRP 627
           K+ Q +K    + G+LH +LL   A + +EL +APGGEFR A+        C++ LGDRP
Sbjct: 214 KIIQTMKQNGAIQGILHVLLLSMSAHVTRELSMAPGGEFRAAHRAAVATENCRVVLGDRP 273

Query: 628 IQ 633
           IQ
Sbjct: 274 IQ 275


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 143 ALSQQNQILYKHIIVKRFYYERKVMYPSIYQNLLHFCKMINKP 271
           +L Q   +L++ I  + FYYE  +   SI+ N+ HF  +I+KP
Sbjct: 21  SLCQFESLLFE-ISNRVFYYEHYLSVASIFINIFHFLILIHKP 62


>U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical
           protein C15B12.2 protein.
          Length = 269

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -2

Query: 237 FW*MLGYITFLS**NLLTIICLYSIWFCCDNAFNILK*QLSSYYTYWAFHILFHY 73
           FW +L +IT+L    LL I CLY  + C  N+F        S+  Y  F + FHY
Sbjct: 62  FWYILTFITYLVWTLLLWIPCLYH-YTCRHNSFYHRHKLCRSFIRY--FSVTFHY 113


>Z29095-12|CAB54287.2|  414|Caenorhabditis elegans Hypothetical
           protein R10E11.3b protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 321 IFNRLFTEVHCTQKNDRGLFIILQKCSRFW 232
           +++ + T VHC    +RG +I L K + FW
Sbjct: 312 MYDLVATVVHCGATPNRGHYITLVKSNSFW 341


>Z29095-11|CAB54286.2|  426|Caenorhabditis elegans Hypothetical
           protein R10E11.3a protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 321 IFNRLFTEVHCTQKNDRGLFIILQKCSRFW 232
           +++ + T VHC    +RG +I L K + FW
Sbjct: 324 MYDLVATVVHCGATPNRGHYITLVKSNSFW 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,200,560
Number of Sequences: 27780
Number of extensions: 322828
Number of successful extensions: 860
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)