Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8m09
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)                29   4.3  
SB_14539| Best HMM Match : Ten_N (HMM E-Value=1.9)                     29   4.3  
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  28   5.7  
SB_21621| Best HMM Match : FKBP_N (HMM E-Value=7.3)                    28   7.6  
SB_6579| Best HMM Match : RVT_1 (HMM E-Value=2.5e-14)                  28   7.6  

>SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 4/137 (2%)
 Frame = +2

Query: 41  NTENESEKIINTK*PKA*CKKQRTDSGSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSL 220
           +++N       TK  K   KK+      +KNY  +   G    K++ KKK   + S  S 
Sbjct: 142 SSDNSGSGDKTTKPEKNDAKKKDKGDKPEKNYAKKKDKGDKPEKNYAKKKNKGSGSGGSG 201

Query: 221 SNLRYVITEKPKWKVFKKREAVAIPAYTALKPLKGCPCGNSGPCK--QKVTPKGVTIHYP 394
           S  + +    PK    KK++  +       KPLK  P  N G  K   K    G   +Y 
Sbjct: 202 SGDKPI---NPKKNYAKKKDKGSGSGSGNGKPLK--PKKNYGKKKNYSKKKDYGKKKNYS 256

Query: 395 QKKK--KFSAFGTKSRR 439
           +KKK  K + +  K  R
Sbjct: 257 KKKKNPKNNKYNKKKNR 273


>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
          Length = 325

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 437 RNIPGKTEKGPYAPNQRVTPNVKVIRPRKFPTWRLDKISYNTYRTPVITPR 589
           +++ G  EK P+ P++   P    ++PR+ PT   +K   ++  TP + PR
Sbjct: 42  KHLAGPAEK-PHRPSRETPP----VQPRRNPTCPAEKHHRSSKETPPVQPR 87


>SB_14539| Best HMM Match : Ten_N (HMM E-Value=1.9)
          Length = 493

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
 Frame = +2

Query: 329 PCGNSGPCKQK-----VTPKGVTIHYPQKKKKFSAFGTKSRRNIPGKTEKGPYAPNQRVT 493
           P G++GP KQ      +    V +H  +KK+ F +  T SRR++  + +     P     
Sbjct: 195 PYGSAGPDKQLLMMSIINKLLVDLHNEEKKRHFVSCNTLSRRSLASRRDARAIMPKM--- 251

Query: 494 PNVKVIRPRKFPTWRLDKI 550
           P+  +  P     W    +
Sbjct: 252 PSAHIPVPESNSAWSASSV 270


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +2

Query: 41  NTENESEKIINTK*PKA*CKKQRTDSGSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSL 220
           N E  +E + +TK      ++  +D  +   +QL + +  V S DFL  +  +   N+++
Sbjct: 177 NNEESAEDLDSTKQTACIEREDSSDQENQPPFQLNDGLNNVLSNDFLPIQGMD-IPNTTV 235

Query: 221 SNLRYVITEKPKW 259
           S+      EK KW
Sbjct: 236 SDCASFAAEKRKW 248


>SB_21621| Best HMM Match : FKBP_N (HMM E-Value=7.3)
          Length = 272

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 223 KSTLRNNRETEMESFQEERSCSNPGVHSL 309
           KSTL + R+T+ ++F  +R+   P VH L
Sbjct: 54  KSTLPDIRDTKKKAFVNQRTTDLPNVHDL 82


>SB_6579| Best HMM Match : RVT_1 (HMM E-Value=2.5e-14)
          Length = 952

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 437 RNIPGKTEKGPYAPNQRVTPNVKVIRPRKFPTWRLDKISYNTYRTPVIT 583
           RN P        + N     N   + P+K  T R D + YN+Y  P ++
Sbjct: 721 RNSPSILSHVVNSINSFACSNNMALNPKKCKTLRFDFLQYNSYECPPLS 769


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,212,659
Number of Sequences: 59808
Number of extensions: 425141
Number of successful extensions: 1216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)