Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8m04
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   2.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.0  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +3

Query: 129 IREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSTDTPVCTFTKTEEK 293
           +R FD +  F    YS     T     +   +H+S K+ L  D   CTF     K
Sbjct: 77  LRLFDKIRVFLDEDYSSAEHFTAL--GNFYFVHESLKNVLLWDFQECTFISVNGK 129



 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 97  LINLVAFKAVTSGSSMVSFPLIL*HTRRK 183
           LIN+  F   ++  +M +FP +   TRR+
Sbjct: 176 LINIHLFHDASNFIAMETFPSVYSKTRRR 204


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = -3

Query: 224 YDSIVRAEVSGAFSFLRVCYRIKGKDTIELPDVTALKATKFIRDWLQSRALYR 66
           YD+ VR +  G  + + V   ++    I   D+T      F + W+  R  ++
Sbjct: 17  YDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQ 69


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 413 YYLLNTIHDIY 381
           YY LN IHD Y
Sbjct: 73  YYKLNKIHDAY 83


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 73  CIAAEAKVTQTQKTSVFNDML 11
           CIAA  KV       +F+D++
Sbjct: 168 CIAAAVKVPSAADDRMFDDII 188


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 73  CIAAEAKVTQTQKTSVFNDML 11
           CIAA  KV       +F+D++
Sbjct: 258 CIAAAVKVPSAADDRMFDDII 278


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 198 YFCAHDAVIHQSCKDE 245
           + C H+ V+H+  K E
Sbjct: 23  HHCHHNGVVHRDLKPE 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,474
Number of Sequences: 438
Number of extensions: 2376
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)