Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8l23
         (470 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   3.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   5.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.6  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 337 NLQVGSKIQSLD 302
           +LQ+G KIQ+LD
Sbjct: 129 SLQIGEKIQALD 140


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
 Frame = +1

Query: 277 DCDFPLVLHPSSGFCFLLEDCP*FNIEQFHRYSG*MTM---------EFTSSIRGFWIIP 429
           DC    V   +  F + +     FNIE F      +T+         E  S +RGFW+ P
Sbjct: 251 DCCLETVSALNGAFLYTINGQGQFNIEMFLCNMSLLTVIPIHVWTSKEKISFLRGFWLSP 310


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 456  KYIYFTQGKWYNPKTSDTR 400
            K IY     W++  T DT+
Sbjct: 1137 KVIYGPSDTWFDENTKDTK 1155


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 77  NMINIKKFITSCRYSILLK*IENES 3
           NM+ ++      R +ILLK ++N S
Sbjct: 661 NMLPVRNVSVDVRDNILLKNLQNPS 685


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,045
Number of Sequences: 336
Number of extensions: 2514
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)