Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8l23
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684...    28   4.4  
02_05_0974 - 33218817-33219634,33220733-33221012                       28   4.4  
04_01_0532 - 6938763-6941177                                           27   5.8  
07_03_1520 + 27415266-27415507,27415608-27415722,27415761-274158...    27   7.6  

>04_04_0016 -
           22167780-22167873,22167978-22168272,22168380-22168455,
           22168665-22168853,22168955-22169176,22169315-22169413,
           22169502-22169582,22169753-22170060,22171611-22171950,
           22172047-22172110,22172191-22172412,22172865-22173043
          Length = 722

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 199 DIRC*RGACYRDIVLHMFHCNLDNHVYQHFHSKGH 95
           D+ C +     D+ +H F    D H Y+  H K H
Sbjct: 96  DLECVQLVFLADVAVHFFLAYRDPHTYRMVHDKRH 130


>02_05_0974 - 33218817-33219634,33220733-33221012
          Length = 365

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
 Frame = +2

Query: 272 DVTAISPSSFIQALDFASYLK-----IVPNLILNNSIAIPD 379
           D+T+I+P S I  +D ++++K     +VP ++ N+++ +PD
Sbjct: 278 DITSIAPISTIAEVDESAFIKSSTNPMVPPVMENSAVDLPD 318


>04_01_0532 - 6938763-6941177
          Length = 804

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 381 LSGIAMELFNIKLGTIFK*EAKSRAWMKDEGEIAVTSRP 265
           LS  + +  NI LGT    +  + AW+   G+ A   RP
Sbjct: 16  LSSPSAQAQNISLGTSLTTQGPNNAWLSPSGDFAFGFRP 54


>07_03_1520 +
           27415266-27415507,27415608-27415722,27415761-27415815,
           27415862-27417849,27418161-27418589
          Length = 942

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 320 ASYLKIVPNLILNNSIAIPDK*QWNLPRVSEVFGL 424
           A+ L +VP L L  SI  PD+    LPR+ E F L
Sbjct: 165 AAILLLVPCLFLETSIPHPDR----LPRLKEYFAL 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,602,907
Number of Sequences: 37544
Number of extensions: 260249
Number of successful extensions: 576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)