Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8l22
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 33 0.041
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 31 0.094
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 31 0.12
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 31 0.12
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 31 0.16
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 30 0.22
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 30 0.29
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 28 0.88
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 28 1.2
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 28 1.2
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 28 1.2
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 27 2.0
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 27 2.7
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 27 2.7
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 27 2.7
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 26 3.5
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 26 3.5
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 3.5
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 26 3.5
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 3.5
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 4.7
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 26 4.7
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 6.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 8.2
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 25 8.2
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 25 8.2
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 8.2
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 32.7 bits (71), Expect = 0.041
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 424 VNCMWLSQDSEKLYAGCGDNNVYVFNLEDGSLISTYKGHNNFIHSI 561
V+C+ L +K+ +G D VY ++L G ISTY + I +I
Sbjct: 235 VSCLALHGSEKKVLSGSWDKMVYYWDLNTGDAISTYNCESGQISNI 280
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 31.5 bits (68), Expect = 0.094
Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = +1
Query: 241 HIHSIDSKKQICSLVSTEKFLIIGTVNEICGWDWKAVVSVKLSKPVWSIKIPSQTFLDYN 420
+I I + +QIC L + ++ ++ + A + +W + +
Sbjct: 87 YIWDITTGEQICQLTGHKDSIV--AIDWSFDGTYIATGGMDSQVRLWKSSTGFEFITAFE 144
Query: 421 DVN-CMWLSQDSEKLY--AGCGDNNVYVFNLEDGSLISTYKGH 540
V+ +WLS + L+ AGC D ++++++L G ++ GH
Sbjct: 145 TVDEIVWLSWHPKGLFLAAGCNDGSIWMWSLPSGKVVQVMYGH 187
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 31.1 bits (67), Expect = 0.12
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 376 VWSIKI--PSQTFLDYNDVNCMWLSQDSEKLYAGCGDNNVYVFNLEDGSLIS 525
+W ++I P ++F+ + L DS LY+G DN+V +++L GS I+
Sbjct: 520 IWDLRIGLPVRSFIGHT-APISSLQFDSNHLYSGSYDNSVRIWDLRSGSPIN 570
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.1 bits (67), Expect = 0.12
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Frame = +1
Query: 226 YNKPKHIHSIDSKKQICSLVSTEKFLIIGTVNEICGWDWKAVVSVKLSKPVWS---IKIP 396
+ + ++ S + C+L EK + +V+ W A S + +WS ++
Sbjct: 32 HKRIRNYESHSGFSEYCTLFGHEKSVTCVSVSP--NKRWIATSSSDGTIKIWSALTFRLE 89
Query: 397 SQTFLDYNDVNCMWLSQDSEKLYAGCGDNNVYVFNLEDGSLISTYKGHNNFIHSI 561
F Y ++ + + S+ L + D + +++ E + KGH N++ SI
Sbjct: 90 CTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSI 144
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 460 LYAGCGDNNVYVFNLEDGSLISTYKGHNNFIHSI 561
L +G D V ++NL+DG+ + H+ I S+
Sbjct: 153 LVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISV 186
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 30.7 bits (66), Expect = 0.16
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 478 DNNVYVFNLEDGSLISTYKGHNNFIHSIHGKNQQII 585
D + ++NLE G L+ T GH+N + + NQ I+
Sbjct: 638 DAKIRIWNLESGELLQTLHGHSNLVSQV-TFNQNIL 672
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 30.3 bits (65), Expect = 0.22
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 361 KLSKPVWSIKIPSQTFLDYNDVNCMWLSQDSEKLYAGCGDNNVYVFNLEDGSLISTYKGH 540
KL K +W+ + ++ L +ND C+ +A C ++ V DG + GH
Sbjct: 158 KLIK-IWNGEKLVKSILAHND--CVRSLCQIPGGFASCSNDGVIKLWTSDGEFLYELHGH 214
Query: 541 NNFIHSI-HGKNQQIIS 588
+F++S+ + NQQ+I+
Sbjct: 215 TSFVYSLTYIHNQQLIA 231
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 109 SQTLSPCGKYLVAGNIYGDLAVFDLDRILNP 201
+ +LSPCG+ + + YG L V DLD NP
Sbjct: 237 AMSLSPCGRDIALASRYG-LLVLDLDNPYNP 266
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 28.3 bits (60), Expect = 0.88
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 371 FDNLTETTAFQSHPHISLTVPIIRNFSVETRLQICFFESIECICF 237
F NL +T ++ + P++ S + IC F+SI CI F
Sbjct: 87 FANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIGCIDF 131
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 439 LSQDSEKLYAGCGDNNVYVFNLEDGSLISTYKGHNN 546
++ D+E L D+ + ++NL D SL +KGH N
Sbjct: 457 IAGDTEMLVT-TNDSRIRIYNLRDKSLELKFKGHAN 491
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 451 SEKLYAGCGDNNVYVFNLEDGSLISTYKGHNNFI 552
S +L +G GD + ++N++ + T +GH I
Sbjct: 519 SRQLASGSGDRTIRIWNVDTQQCVQTLEGHTGAI 552
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/58 (22%), Positives = 29/58 (50%)
Frame = +1
Query: 367 SKPVWSIKIPSQTFLDYNDVNCMWLSQDSEKLYAGCGDNNVYVFNLEDGSLISTYKGH 540
++ VW+IK + DVN + +S+D + + D + +++ G ++ +GH
Sbjct: 455 NRAVWTIKAHDR------DVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGH 506
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 27.9 bits (59), Expect = 1.2
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Frame = +1
Query: 52 LSKHKTFTMLNKMLYNTVLSQTLSPCGKYL---VAGNIYGDLAVFDLDRILN--PVLELL 216
L+KH+ +LN Y L + + L V I +A+ +ILN P +
Sbjct: 540 LAKHQVMLLLNMEAYEQALKKVIETMDNNLIIYVVLQIKQQMAIASFFQILNEYPDAVKV 599
Query: 217 SVEY---NKPKHIHSI---DSKKQICSLVSTEKFLIIGTVNE 324
VE+ N K +H D KQ ++++ E L TVN+
Sbjct: 600 YVEFAKKNDRKTLHDFFYQDDNKQGIAVLAVEDTLKTATVNQ 641
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 421 DVNCMWLSQDSEKLYAGCGDNNVYVFN--LEDG 513
+VNC+ S+D ++G D N+Y F+ LE+G
Sbjct: 183 NVNCIVSSEDGRIFFSGNKDPNLYEFSYQLEEG 215
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 412 DYNDVNCMWLSQDSEKLYAGCGDNNVYVFNLEDGSLISTYKGHNNFIHSI 561
++N + W S++S + AG D NVYV++ G L GH ++ +
Sbjct: 269 EHNLLGVAW-SRNSRFVGAGSSDKNVYVWS-ATGDLRYVLPGHEGSVNHV 316
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 448 DSEKLYAGCGDNNVYVFNLEDGSLISTYKGHNNFIHSI 561
D L G GD +++E IS KGH I S+
Sbjct: 116 DDGHLLTGSGDKTCMFWDIEQAKAISVLKGHEMDIVSL 153
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 26.6 bits (56), Expect = 2.7
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +1
Query: 337 DWKAVVSVKLSKPV--WSIK--IPSQTFLDYNDVNCMWLSQDSEKLYAGCGDNNVYVFNL 504
D +A+ + K V WS+ I +T +++ DV L+ + C D + V++
Sbjct: 234 DSEALWTASADKTVREWSLYQGIHEETRMEHPDVCTDVLTLADGNIATACRDEEIRVWDT 293
Query: 505 EDGSLISTYKGHNNFIHSIHGKNQQIIS 588
G++ Y GH + I +IS
Sbjct: 294 TTGNVKDIYSGHYESVTKILQWKSYLIS 321
Score = 26.2 bits (55), Expect = 3.5
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +1
Query: 460 LYAGCGDNNVYVFNLEDGSLISTYKGHNNFI 552
+Y G D+ + +N+ G + T GH +++
Sbjct: 105 IYTGSWDHTIKKWNVSTGECVETLIGHTDYV 135
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 3.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +1
Query: 424 VNCMWLSQDSEKLYAGCGDNNVYVFN 501
VNC S D+ GC D+++++++
Sbjct: 352 VNCAAFSDDASMFALGCADSSIHLYS 377
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/61 (19%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 355 SVKLSKPVWSIKIPSQTFLDYN-DVNCMWLSQDSEKLYAGCGDNNVYVFNLEDGSLISTY 531
S+K+ V + P++ ++ + C+ ++ ++ +L +G D +V ++N+ D ++
Sbjct: 229 SIKVWDLVAGRQTPTKKLSNHQKSITCLAMNSENTRLLSGGLDGHVKIYNISDWKVVHGM 288
Query: 532 K 534
K
Sbjct: 289 K 289
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = -2
Query: 386 MLHTGFDNLTETTAFQSHPHISLTVPIIRNFSVETRLQICFFESIECICFGLLYSTDNNS 207
+ H + +TE Q P +L P++ + + FF +++ F +Y TD N
Sbjct: 1097 VFHDDSNPITELLDLQPLPITALHDPVLEGICAK---RFSFFNAVQTQFFHTIYHTDTNI 1153
Query: 206 STG 198
G
Sbjct: 1154 FVG 1156
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +1
Query: 346 AVVSVKLSKPVWSIK--IPSQTFLDY-NDVNCMWLSQDSEKLYAGCGDNNVYVFNLEDGS 516
A S + +WS P + F + +DV+C+ +S + G D ++++ G
Sbjct: 437 ATASHDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCRLWDVHRGH 496
Query: 517 LISTYKGHNNFIHSI 561
+ + GH + ++
Sbjct: 497 SVRVFNGHTQPVTAV 511
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 79 LNKMLYNTVLSQTLSPCGKYLVAGNIYGDLAVFDLD--RILNPVLELLSVEYNKPKH 243
+N Y+ ++ SP Y A + GD+A+FD + N + +L E KPK+
Sbjct: 177 VNTQYYSNIVVDPFSP--NYFAANSYDGDIAIFDTRYFKSDNYLQIILRNENKKPKN 231
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -2
Query: 248 CICFGLL---YSTDNNSSTGFKIRSRSNTA 168
C+ G+L YS NNS+ F++ SNTA
Sbjct: 498 CLFSGVLRSIYSAQNNSARVFELSKNSNTA 527
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 424 VNCMWLSQDSEKLYAGCGDNNVYVFNLEDGSLISTYKGH 540
V C+ + ++ G GD + +++L G L T GH
Sbjct: 166 VRCVDVEPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGH 204
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 64 KTFTMLNKMLYNTVLSQTLSPCGKYLVAGNIYGDLAVFDLDR 189
K+F + + NT +S T SP G+ + D+A+ D+D+
Sbjct: 753 KSFNDSSSISNNTKISITKSPSGEKVSVFKEMSDIALRDMDK 794
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 487 VYVFNLEDGSLISTYKGHNNFIHSIHGKNQQII 585
+ + LEDGS+I T H++ + H + + +I
Sbjct: 980 ISINKLEDGSIIPTQFSHSSLLAFCHEQKEFVI 1012
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 329 HISLTVPIIRNFSVETRLQICFFESIECICF 237
H + +P+I+ E ++ F+ I+CICF
Sbjct: 57 HRAWIIPLIKQAFAEAKIS---FKDIDCICF 84
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 523 STYKGHNNFIHSIHGKNQ 576
S Y H NF+H IH K +
Sbjct: 255 SAYWYHMNFVHGIHSKGR 272
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 515 LPSSKLNTYTLLSPQPAYSFSLS*DS 438
+PSS +T +LLSP SFS DS
Sbjct: 234 MPSSHSSTASLLSPLDTTSFSTKLDS 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,784
Number of Sequences: 5004
Number of extensions: 54592
Number of successful extensions: 175
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -