Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8l20
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.0  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    25   6.0  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   7.9  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   7.9  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 99  ICSVCSRDKPVSDYCDRCE 155
           +C +CS+ +P + YC  C+
Sbjct: 183 LCMICSKVQPAAQYCKYCK 201


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 43  SEIIKSLKCRSKFLVFWSVFAQFALEISLFLIIATGAK 156
           +E   +L   S F+V ++V+    L +   LI ATGAK
Sbjct: 57  AETYYTLVAGSHFIVKYTVYTIMGLNMIFHLIQATGAK 94


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 170 KYCETCHGQDHSETQTPLI 226
           + C TCH   H+ +  PLI
Sbjct: 149 RVCRTCHTDTHTSSTCPLI 167


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 81  SGVLERICSVCSRDKPVSDYCDRCEV 158
           S  L R CS C+ +K  +  C  C++
Sbjct: 42  SANLTRTCSTCTEEKVKTQRCAACKI 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,762
Number of Sequences: 5004
Number of extensions: 37717
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)