Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8l20
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1154 - 10850206-10850318,10850528-10850658,10850998-108511...    30   1.1  
02_05_1130 - 34319558-34319603,34320236-34320335,34320498-343205...    29   2.7  
09_04_0696 - 19559227-19559622,19559710-19559862,19559957-195607...    29   3.5  
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947...    28   4.6  
06_03_1304 - 29187930-29188273,29188926-29189039,29189453-291897...    28   4.6  
07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937...    28   6.1  
10_08_0252 - 16191136-16191279,16191639-16191750,16191833-161919...    27   8.1  
03_03_0062 + 14170303-14170637,14171799-14172029,14172224-141723...    27   8.1  

>07_01_1154 -
           10850206-10850318,10850528-10850658,10850998-10851110,
           10851221-10851307,10852873-10853000,10853132-10853210,
           10853262-10853354,10854211-10854295,10855000-10855085,
           10855183-10855375,10856891-10856970
          Length = 395

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 572 AGFIIGAFPAKLI**IYCRFTDLLFSTLLR*FC*FFLKICKYCNY 438
           AG ++G   A L    Y R  ++    LL  FC FFL   K+C+Y
Sbjct: 127 AGAVLGVLSAAL----YGRKVNIWKKQLLNFFCEFFLNFSKHCSY 167


>02_05_1130 -
           34319558-34319603,34320236-34320335,34320498-34320577,
           34320680-34320840,34321602-34321731,34322055-34322230,
           34322873-34323068,34323768-34323889,34324376-34324468,
           34324672-34324740,34325259-34325423,34325771-34326061
          Length = 542

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 99  ICSVCSRD-KPVSDYCDRCEVPARSNIVKLATVKITP 206
           IC  C+ + + +S+YC +C    R  + K   VKI P
Sbjct: 315 ICPTCAGEGEVISEYCKKCAGEGRVRVRKEIKVKIPP 351


>09_04_0696 -
           19559227-19559622,19559710-19559862,19559957-19560784,
           19561727-19561842,19562286-19562319
          Length = 508

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 162 ARSNIVKLATVKITPRLKLLSFRVSKNYLYFSF 260
           ARS + +   + +TPR++ LS  +SK   Y+ F
Sbjct: 132 ARSYLERWLQIAVTPRIEELSLSMSKGKAYYDF 164


>09_02_0450 +
           9468495-9468528,9468947-9469062,9470031-9470858,
           9470955-9471107,9471194-9471604
          Length = 513

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 162 ARSNIVKLATVKITPRLKLLSFRVSKNYLYFSF 260
           ARS + +   + +TPR++ LS  +SK   Y+ F
Sbjct: 132 ARSYLERWLQIAVTPRIEELSLSMSKGKSYYDF 164


>06_03_1304 -
           29187930-29188273,29188926-29189039,29189453-29189722,
           29190098-29190234,29190483-29191159
          Length = 513

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +3

Query: 69  QIKISGVLERICSVCSRDKPVSDYCDRCEVPARSNIVKLATVKITPRLKLLSFRVSKNYL 248
           ++ +SG+  R C  CSR   ++++ D+ +   R  +      +  P+ + +SF  S+   
Sbjct: 210 KVIVSGLERRFCQQCSRFHGLAEF-DQKKKSCRRRLSDHNARRRKPQQEAISFGSSRLAT 268

Query: 249 YFSFARPGTDL 281
            F  AR  TD+
Sbjct: 269 MFYDARQQTDI 279


>07_03_0725 +
           20991640-20992471,20993308-20993418,20993542-20993739,
           20993860-20993891,20993943-20994153,20994806-20995043,
           20995507-20995657,20996171-20996533
          Length = 711

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 78  ISGVLERICSVCSRDKPVSDYCDRCEV 158
           +SG  +R+ ++C RD+  + Y D C V
Sbjct: 97  VSGAFQRLRALCGRDRDATYYHDLCVV 123


>10_08_0252 -
           16191136-16191279,16191639-16191750,16191833-16191924,
           16192564-16192641,16192764-16192796,16193712-16193771,
           16193912-16193999,16194155-16194180
          Length = 210

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 99  ICSVCSRDKPVSDYCDRC 152
           ICS+C +++ V  YC  C
Sbjct: 60  ICSLCDKEQDVQQYCSGC 77


>03_03_0062 +
           14170303-14170637,14171799-14172029,14172224-14172326,
           14173284-14173513,14174258-14174456
          Length = 365

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 152 RSTCPFKYCETCHGQDHSET 211
           R  CP K+C TC G  H E+
Sbjct: 79  RVDCPGKHCGTCAGLGHQES 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,160,226
Number of Sequences: 37544
Number of extensions: 200776
Number of successful extensions: 436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)