Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8l20
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF003130-13|AAK73876.1|  220|Caenorhabditis elegans Hypothetical...    29   3.1  
U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    28   5.5  

>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical protein
            C28A5.1 protein.
          Length = 1223

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 37   IYSEIIKSLKCRSKFLVFWSVFAQFALEISLFLIIATGAKYLP 165
            + + I+K LK   +F +FW +  +F+  + L  +I     Y+P
Sbjct: 990  VEASILKDLKYDEEFCIFWRLVVEFSDTVPLPRLIIKSKIYVP 1032


>AF003130-13|AAK73876.1|  220|Caenorhabditis elegans Hypothetical
           protein F55A12.10 protein.
          Length = 220

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 60  SEMQIKISGVLERICSVCSRDKPVSDYCDRCEVPARS 170
           S+ Q  I+      C  C R  P +D+C  C++P ++
Sbjct: 14  SKRQFFITACSHVFCETC-RTTPTADFCHLCKIPTKT 49


>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -3

Query: 158 YFAPVAII--RNRLIS-RAN*ANTLQNTRNFDLHFRDLIIS 45
           +F P+ II   NR+I+ R N    +QN ++F  HF  L +S
Sbjct: 288 FFLPIIIIYQTNRIINQRYNAIKRIQNEKSFATHFASLDLS 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,552,528
Number of Sequences: 27780
Number of extensions: 209462
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)