Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8l11
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    29   0.54 
SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1...    27   2.2  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.8  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    25   8.8  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   8.8  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 466 MSTCYVIALVLSTENENVVQPSVQPITYHRLD 371
           MS C  I   +STEN+N++ P    + Y  LD
Sbjct: 434 MSLCTAILEGVSTENDNLILPMYMWVLYQALD 465


>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 284 DVPYPCELTIRPSRTYA-NISRAISSSCISLAIELQ 180
           + P PC++T+ P RT+   I    +S  IS  ++L+
Sbjct: 52  NTPVPCKITVTPQRTFTFTIHTPPTSWLISKTLDLE 87


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 352 EGIRASCPRKCE*VMWQNISVTQTSPIHA 266
           +GI A CPR  + ++W N S      +HA
Sbjct: 286 KGIFALCPRSIQNLVWTNQSTIPMMTLHA 314


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 466 MSTCYVIALVLSTENENVVQPSVQPITYHRLD*NEPCSEGIRASCP 329
           M T   +AL+L  +N N+  P+ +P+T +  + N   S     + P
Sbjct: 381 MFTMRYLALILRVQNSNMPPPAPRPVTNNSSNNNTNQSNASNENSP 426


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 617 SSYPRCCYYIIDDTNSTTKL*FLHKM*NLCS 525
           SS+P C  Y++D   +T+   ++  M   CS
Sbjct: 134 SSWPTCIAYVVDTPRATSTSTWMSSMLYACS 164


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 14  KPLLSLQIGIHDLGKNI*NG 73
           KP LS QIGI  L  NI +G
Sbjct: 536 KPFLSRQIGISTLSSNISSG 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,766
Number of Sequences: 5004
Number of extensions: 41747
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)