Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8l11
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    28   6.2  
Z83216-7|CAB05676.2|  320|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
 Frame = -3

Query: 574 IQQQN-CDSYTKCEISALLDHFATKSIECVIVIVIG*MSTC----YVIALVLSTENENVV 410
           IQ QN C S   C+ S         + +CV   +     TC      + +V   +  N V
Sbjct: 398 IQAQNLCQS--ACQPSC--QSSCGSNTQCVQACIPSCQQTCGQQAQPVIVVQQPQQNNCV 453

Query: 409 QPSVQPITYHRLD*NEPCSEGIRASCPRKCE*VMWQNISVTQTSPI 272
           Q + QP        N  C    + SC + C     Q + V Q+SP+
Sbjct: 454 Q-ACQPQCQQTCGSNVQCVSACQNSCQQSCGNQQQQQVIVVQSSPM 498


>Z83216-7|CAB05676.2|  320|Caenorhabditis elegans Hypothetical
           protein C08F11.9 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/79 (26%), Positives = 39/79 (49%)
 Frame = -3

Query: 619 FLPILVVVIILSMIQIQQQNCDSYTKCEISALLDHFATKSIECVIVIVIG*MSTCYVIAL 440
           +LPI + +  LS +   Q+  +   K  +   +  F +K++     IV+   ST +V +L
Sbjct: 207 YLPITISIHKLSRLSTNQER-NKPQKYILWQTIFIFLSKAVFIPAFIVLALPSTDFVNSL 265

Query: 439 VLSTENENVVQPSVQPITY 383
           VL    + +V P +  I+Y
Sbjct: 266 VLMVVTDVLVVPLIIQISY 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,156,882
Number of Sequences: 27780
Number of extensions: 227572
Number of successful extensions: 582
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)