Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8l11
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 307 TLPIHIYEDNWLLYPRNR 360
           T+PIH +   WL   RNR
Sbjct: 536 TVPIHTWIHPWLPLLRNR 553


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 237 VCTRRTYCKLAWIG 278
           +CT   Y K AWIG
Sbjct: 182 ICTALGYLKDAWIG 195


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 237 VCTRRTYCKLAWIG 278
           +CT   Y K AWIG
Sbjct: 177 ICTALGYLKDAWIG 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,482
Number of Sequences: 438
Number of extensions: 3008
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)