Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8l10
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1022 + 13260647-13260834,13260965-13261070,13262052-132621...    29   2.2  
01_07_0118 + 41176159-41178909                                         29   3.9  

>03_02_1022 +
           13260647-13260834,13260965-13261070,13262052-13262169,
           13262271-13262539
          Length = 226

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 471 DEAKRKDFLCGFRKRKLERKKKA 539
           D+   KDF+ GF KRK +R+K+A
Sbjct: 58  DKKALKDFVTGFHKRKKKRRKEA 80


>01_07_0118 + 41176159-41178909
          Length = 916

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
 Frame = -2

Query: 380 SQLIALI--LSESCLTK---KEYHRIL*FFNPITITENH*CVVD-I*QVGNLKSANK 228
           S  IAL+   S S LT    K YH ++  F  I   E+H CVVD + + G L+ A+K
Sbjct: 774 STFIALLSACSHSGLTDEGLKYYHLMIEHFGIIPTPEHHVCVVDMLGRAGRLQEAHK 830


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,732,094
Number of Sequences: 37544
Number of extensions: 158067
Number of successful extensions: 193
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)