Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8l06
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0541 + 4251931-4254141 29 2.8
06_02_0079 - 11512747-11512770,11513281-11513321,11513409-115135... 28 3.7
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417... 28 5.0
02_01_0028 - 172243-172435,172550-172701,172801-173341,173640-17... 28 5.0
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680... 27 6.5
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914... 27 6.5
01_06_0932 - 33147656-33148098,33148631-33148675,33148815-331489... 27 6.5
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 27 8.7
>12_01_0541 + 4251931-4254141
Length = 736
Score = 28.7 bits (61), Expect = 2.8
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Frame = +1
Query: 28 VIGMSTIVSFITVHYNTEILMYAMLAT-AVVVFVCILLACSN-FDFTKWFIYVIVISTAF 201
V+ ++ ++S+ V Y ++ VVV+ C LL C++ T
Sbjct: 62 VVWLALMLSYPAVSYTIGLMQSGSFRNDMVVVWACFLLGCADGIAACSLDGADQQARTMI 121
Query: 202 SVIVMIIGVTTLITNTHMKSLDLGLLIVGT---LINVVILVLELQTIL-GGRSVELHEDD 369
S + V L+ +++ SL L L ++ + L+NV LVL L+ +L GR L D+
Sbjct: 122 SQATQVFYVMLLLI-SYLGSLQLQLKVLLSLLWLLNVAKLVLRLRGLLAAGRDRVLTADN 180
Query: 370 YAMGAFLLYISIVDIF 417
+ + ++ + + I+
Sbjct: 181 WLISKYMAHEKVSSIW 196
>06_02_0079 -
11512747-11512770,11513281-11513321,11513409-11513505,
11513555-11513965,11514493-11514665,11514829-11516008
Length = 641
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 7 IVCLVLAVIGMSTIVSFITVHYNTEILMYAMLATAVVV-FVCILLACSNFDFTKW 168
IV L + + G+S + F+ E L ++A ++VV CI L C+ F KW
Sbjct: 461 IVILAVLISGLSLLFPFLP-WLPYEYLSTIVIAFSIVVGCCCIALPCALFGSNKW 514
>05_01_0500 -
4171090-4171191,4171989-4172061,4172376-4172701,
4173164-4173555,4174521-4174853,4177118-4177209,
4178052-4178111,4178760-4178903,4180142-4180213,
4180345-4180510,4180776-4180923
Length = 635
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 316 LELQTILGGRSVELHEDDYAMGAFL 390
L ++ I G +++ELHED+Y G L
Sbjct: 443 LLIELITGRKTMELHEDEYQEGGIL 467
>02_01_0028 -
172243-172435,172550-172701,172801-173341,173640-173824
Length = 356
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 175 YVIVISTAFSVIVMIIGVTTLITNTHMKSLDLGLLIVGTLINVV-ILVLEL 324
Y I + V+ +I + + + +MKS+ G ++GTL ++ +L+L L
Sbjct: 81 YAITFANLSPVLTFLIAIALGVESLNMKSMAGGAKVLGTLTSMAGVLLLSL 131
>10_08_0663 -
19666476-19667017,19667664-19667755,19668039-19668095,
19668304-19668447,19668567-19668613,19668733-19668791,
19668975-19669045,19669274-19669341,19669431-19669598,
19669885-19669944,19670075-19670251
Length = 494
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 204 RNSDDYRCDNVNNEHSHEVVGPRPFDCRHID 296
R SDD CD + + EV P+P C ++
Sbjct: 428 RCSDDDPCDAIETQDGSEVQSPQPSHCASME 458
>03_06_0293 -
32889813-32890019,32890144-32890301,32891310-32891423,
32891531-32891777
Length = 241
Score = 27.5 bits (58), Expect = 6.5
Identities = 31/148 (20%), Positives = 69/148 (46%), Gaps = 3/148 (2%)
Frame = +1
Query: 4 NIVCLVLAVIGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLACSNFDFTKWFIYVI 183
N++ L L + +S V + + +++ A TAVVV L A + + + +
Sbjct: 97 NLLLLGLFTVAISFAVGMTCAYTSGKVIFEAAALTAVVVIS--LTAYTFWAAKRGHDFNF 154
Query: 184 VISTAFSVIVMIIGVTTLITNTHMKSLDLGLLIVGTLINVVI---LVLELQTILGGRSVE 354
+ FS ++++I + +LI + +I G L ++V ++ + I+ +
Sbjct: 155 LGPFLFSAVMVLI-LFSLI-QIFFPLGKISEMIYGGLASLVFSGYIIYDTDNIIKRYTY- 211
Query: 355 LHEDDYAMGAFLLYISIVDIFLQFVQIL 438
D+Y A LY+ ++++FL +++L
Sbjct: 212 ---DEYVWAAVSLYLDVINLFLALLRVL 236
>01_06_0932 -
33147656-33148098,33148631-33148675,33148815-33148945,
33149192-33149817
Length = 414
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 178 VIVISTAFSVIVMIIGVTTLI 240
VI++STAF++IV I +TT +
Sbjct: 49 VIILSTAFTLIVFIAPITTFL 69
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 84 LDVCNAGDRCRCVCL 128
+D CN DR +CVCL
Sbjct: 271 VDCCNYSDRSKCVCL 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,089,464
Number of Sequences: 37544
Number of extensions: 300437
Number of successful extensions: 695
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -