Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8l05
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    26   3.5  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   3.5  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    25   6.1  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   6.1  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   8.0  

>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 432 TQTGCVV*FHAVRLQENQPA*EVDSQLVNIFEQHHDFLCGVVAKDHHTE 286
           ++ G ++ F+A      +    V  +L  +FE H+D L G +  D H++
Sbjct: 38  SKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSD 86


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 577 PSPEPSEWPCKRHTPAPHSQRA 512
           PSP  SE   +RHTP  +SQ++
Sbjct: 88  PSPAESESSERRHTPQTNSQKS 109


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 438 NLTAEVSLLVSRVKSGQNLAYQWADARCEWGAGVCRLQGHSEGSGEG 578
           N TA   +    + +G N+ +Q    R  WGA +   +G  +  G G
Sbjct: 192 NETAGEGVTAYVIDTGINIEHQDFQGRATWGATIPTGEGEVDDHGHG 238


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 536 TSPPFATSISPLISQILPTLDPRDQKGHLSSKVTRR 429
           TSPPF  +  P++++   T+    +    S K+ ++
Sbjct: 676 TSPPFVNNTKPIVAKSPVTVTASSETNKKSQKINKK 711


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 378 AGSPANVLHETTLHSRSASRNLTAEV-SLLVSRVKSGQNLAYQWADARC 521
           A S  N+L + +  ++S  R +   + S+L   +K+GQ L+ +W D+ C
Sbjct: 18  ASSGCNILGQPSSSAKSVGRAIVGGLESVLEWDLKTGQLLS-KWKDSDC 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,443
Number of Sequences: 5004
Number of extensions: 38260
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)