Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8k21
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    62   7e-11
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    33   0.047
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    32   0.062
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    28   1.0  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   4.1  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   7.2  

>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
 Frame = +2

Query: 272 SRERCLMNLKRAKVP-KFGSTPTATAAVLVPLCRVAEVPSLLYTVRSSNLRTNSGQISFP 448
           S +  L++  R  +P K  + PT  A+VL+PL   ++  SLL T RS NLR+++GQ+ FP
Sbjct: 92  SHQIYLLHKNRPTLPLKPTNQPTRFASVLMPLVNTSQGASLLLTQRSPNLRSHAGQMCFP 151

Query: 449 GGKTDKNE-TPIETALRETDEEIG 517
           GG+ + ++ +    ALRET EEIG
Sbjct: 152 GGRVEPSDGSHYYAALRETYEEIG 175


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = +2

Query: 359 PLC-RVAEVPSLLYTVRSSNLRTN-SGQISFPGGK---TDKNETPIETALRETDEEIGLS 523
           P C  +  VP +L   RS       SG ++ PGG    TDK++  I+TA RET EE+G+ 
Sbjct: 50  PQCIPITSVPYVLLIQRSFRDTDRWSGHMALPGGTRSLTDKSD--IQTAHRETLEEVGID 107

Query: 524 AKE 532
            ++
Sbjct: 108 LRK 110


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 443 FPGGKTDKNETPIETALRETDEEIG 517
           FP GK DK+E+ ++ A+RE  EE G
Sbjct: 125 FPKGKIDKDESDVDCAIREVYEETG 149


>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +2

Query: 437 ISFPGGKTDKNETPIETALRETDEEIGLSAKEID---VWGHGPAVPGRNNKIMITPV 598
           I  P G  D  E+  + A+RE  EE G     +D   V  + P +   N KI++  +
Sbjct: 85  IEIPAGLVDSKESCEDAAIRELREETGYVGTVMDSTTVMYNDPGLTNANLKIILADI 141


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 511 LFISLPKCCFNGSFIFISFS 452
           +F+ LP CC +  F+ +SFS
Sbjct: 277 VFLFLPVCCLDPHFLHLSFS 296


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 323 GSTPTATAAVLVPLCRVAEVPSL--LYTVRSSNLRTNS 430
           GS+PT+ +A+  P   V+ +PSL    T  SS+L  +S
Sbjct: 294 GSSPTSESALNSPASSVSSLPSLGASQTTDSSSLNQSS 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,753
Number of Sequences: 5004
Number of extensions: 53019
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)