Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8k21
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0479 + 17627605-17627839,17628965-17629107,17630018-176301... 53 2e-07
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 50 2e-06
08_02_0481 + 17636359-17636593,17638136-17638278,17638431-176385... 48 5e-06
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960... 28 5.6
02_01_0570 - 4195409-4195443,4196245-4196333,4196539-4196630,419... 28 5.6
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 28 7.4
06_01_0404 + 2892750-2892984,2893118-2893327,2893415-2893837,289... 28 7.4
06_03_0417 + 20576716-20576742,20578110-20578345,20578347-205786... 27 9.8
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 27 9.8
>08_02_0479 +
17627605-17627839,17628965-17629107,17630018-17630137,
17630497-17630721
Length = 240
Score = 52.8 bits (121), Expect = 2e-07
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Frame = +2
Query: 344 AAVLVPLCR-VAEVPSLLYTVRSSNLRTNSGQISFPGGKTDKNET-PIETALRETDEEIG 517
AAVL+ L R A +L T RSS L ++SG++S PGGK ++ + TALRE EEIG
Sbjct: 49 AAVLICLFRGAAGELRVLLTKRSSKLSSHSGEVSLPGGKAEEGDADDAATALREAKEEIG 108
Query: 518 LSAKEIDVWGHGPAVPGRNNKIMITPVIGTIFN---FKP 625
L + V + + +++ PV+G + + FKP
Sbjct: 109 LDPASVTVVASLEHFLSK-HLLVVVPVVGILSDIQAFKP 146
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Frame = +2
Query: 314 PKFGSTPTATAAVLVPLCRVAEV--PSLLYTVRSSNLRTNSGQISFPGGKTDKNET-PIE 484
P + + P AAVLV L P ++ T R+++L ++SG++S PGGK ++ +
Sbjct: 56 PAYLAAPKGYAAVLVCLFEDPHGGDPRVILTKRAASLSSHSGEVSLPGGKVEEGDADATA 115
Query: 485 TALRETDEEIGLSAKEIDV 541
TALRE EEIGL + +
Sbjct: 116 TALREAKEEIGLDPALVSI 134
>08_02_0481 +
17636359-17636593,17638136-17638278,17638431-17638550,
17638916-17639116
Length = 232
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Frame = +2
Query: 389 LLYTVRSSNLRTNSGQISFPGGKTDKNET-PIETALRETDEEIGLSAKEIDVWGHGPAVP 565
++ T RSS+L T+SG+++ PGGK ++ + TALRE EEIGL + V
Sbjct: 65 VILTKRSSSLSTHSGEVALPGGKAEEGDADDAATALREAKEEIGLDPSLVTVVASLEHFL 124
Query: 566 GRNNKIMITPVIGTIFN---FKP 625
+ + +++ P++G + + FKP
Sbjct: 125 SK-HLLVVVPIVGILSDIEAFKP 146
>04_04_1371 +
32995337-32995358,32995745-32995822,32995876-32996019,
32997595-32997930,32998014-32998166,32998286-32998501,
32998600-33000695
Length = 1014
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 619 KIEYSTNYWGDHYFVITPRYCRTMAPDVYFFSRKPNLFISLPKCCFN 479
KI+ + W D ITP C+ P + FS L SLP C N
Sbjct: 737 KIKTLSLGWNDFEGQITPNLCKLKCPRIIDFSHN-KLSGSLPPCVGN 782
>02_01_0570 -
4195409-4195443,4196245-4196333,4196539-4196630,
4196726-4196833,4196984-4197118,4197211-4197256,
4197358-4197458,4198285-4198422,4198503-4198601,
4198740-4198856,4199195-4199356,4199734-4199793,
4200371-4200538,4200608-4200718,4201401-4201499,
4201579-4201644,4202407-4202490,4202563-4202605,
4202684-4202739,4202817-4202925,4203442-4203524,
4203842-4203925,4204311-4204382,4204462-4204539,
4204633-4204716,4204806-4204876,4205943-4206012,
4206495-4206626,4207168-4207284,4208185-4208367
Length = 963
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 137 LNR*TISSFKDLKN*IKLNTYSTCNLLNEMCAKSPFSVNSIFCLTSRERCLM 292
L + T+ +KN NT+ C + NE ++ P+ +N IF SR +
Sbjct: 832 LTQDTLDHANKVKNTFIFNTFVLCQVFNEFNSRKPYELN-IFDGVSRNHLFL 882
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 467 NETPIETALRETDEEIGLSAKEI 535
+E +E A RETDEEI + A+E+
Sbjct: 516 SEKKLEDAKRETDEEIQMCAREL 538
>06_01_0404 +
2892750-2892984,2893118-2893327,2893415-2893837,
2894300-2894514
Length = 360
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = +1
Query: 304 G*GSKVRKYTNSYGCGFSAFVSCCRSSFSIIYSKVFKFTNKQWSNIFSGWKN 459
G G Y N CG S +C S S+ + + T + I GW N
Sbjct: 300 GAGGGKYNYQNGARCGMSGAYACSNPSSSLSWDGI-HLTEAAYKQIADGWVN 350
>06_03_0417 +
20576716-20576742,20578110-20578345,20578347-20578601,
20578731-20579298
Length = 361
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/125 (19%), Positives = 46/125 (36%)
Frame = +2
Query: 119 IITNPSLNR*TISSFKDLKN*IKLNTYSTCNLLNEMCAKSPFSVNSIFCLTSRERCLMNL 298
++T+P R + L N + +T +C ++ + + S R + L
Sbjct: 119 LVTSPEDMRLLLIISSVLVNQMNGERDATTGFFGRLCTEAHLDADRNYLAASSTRASLQL 178
Query: 299 KRAKVPKFGSTPTATAAVLVPLCRVAEVPSLLYTVRSSNLRTNSGQISFPGGKTDKNETP 478
K + + G+ P + + P + P L R S + + G E P
Sbjct: 179 KTSAMDAPGAYPYSRRPLFRPEPSPSREPRPLCKGRGSTSSSTGDRARSRTGLAVAREEP 238
Query: 479 IETAL 493
++TAL
Sbjct: 239 VDTAL 243
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 491 VLFQ-WEFHFYQFFHPEKIFDHCLFVNLKTLLYIIEKELRQHDTKALKPQP 342
VLFQ WE H + FH D C + +K + + E +R + A+ PQP
Sbjct: 931 VLFQIWEGHS-ELFH-----DVCSSIGVKMVQFSNENPVRAREVLAIGPQP 975
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,244
Number of Sequences: 37544
Number of extensions: 288208
Number of successful extensions: 651
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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