Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8k20
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    26   4.1  
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    25   7.1  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   9.4  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   9.4  

>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 340 KIRRTCKITSPIGSTIKVAIPYKSLED 260
           K+ R C IT+   ST  V +P K+L+D
Sbjct: 139 KLDRGCIITNSNCSTAAVVVPLKALQD 165


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 202 TNDGVQ*IYFRYLTYTKACSPRVIY 276
           ++D ++ I  R++TYTKA  P V Y
Sbjct: 136 SDDNIESIKKRFVTYTKASMPVVEY 160


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 356 LPCLFKDKTYMQNNLSYRKY 297
           L CLF++K YM++ +S+  Y
Sbjct: 416 LNCLFEEKKYMKHFISWLNY 435


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 125 YNYVSLLSINYPINEQTSFTTFV 193
           Y  +  + IN P+N QTS T  V
Sbjct: 100 YGTIEFMKINEPLNGQTSTTAIV 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,342
Number of Sequences: 5004
Number of extensions: 46970
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)