Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8k19
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...   162   4e-41
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    74   1e-14
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    54   1e-08
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    38   7e-04
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    29   0.34 
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    29   0.46 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    26   4.2  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.4  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   9.8  

>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score =  162 bits (393), Expect = 4e-41
 Identities = 69/129 (53%), Positives = 99/129 (76%)
 Frame = +1

Query: 166 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 345
           GT+I A  +  GV++ ADSRTT GAYIANRVTDKLT++TD I+CCRSGSAADTQ +AD++
Sbjct: 24  GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83

Query: 346 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGGM 525
            Y+L+ ++++ G  P V TAA +  E+CY  ++ L AG++VAG+D+K G  +YSIP+GG 
Sbjct: 84  KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGS 143

Query: 526 VQRXAVSIG 552
           + +  ++IG
Sbjct: 144 LHKQPLAIG 152


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 37/121 (30%), Positives = 69/121 (57%)
 Frame = +1

Query: 160 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 339
           STGT+I+       +V+GAD+R T G  IA++   KL  I+  I+C  +G+AADT+ +  
Sbjct: 33  STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTS 92

Query: 340 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 519
           +++ ++  H +     P V TA  + ++  + Y+  + A +++ G+D  KG  +++I   
Sbjct: 93  MISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAH 151

Query: 520 G 522
           G
Sbjct: 152 G 152


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
 Frame = +1

Query: 166 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 345
           GT+ +A  +  G+V+  DSR + G  IA++   K+ +I   +    +G AAD Q    ++
Sbjct: 61  GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL 120

Query: 346 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 522
                 H++   +   V  A+ I   + Y+Y+   L  G ++AG  K   A  Y    G 
Sbjct: 121 GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSDGT 180

Query: 523 MVQRXAVSIG 552
            ++    S+G
Sbjct: 181 RLKGDLFSVG 190


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +1

Query: 154 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 333
           P  TG+S++A +F  GV+I AD+  + G+       ++LTK+ D       G  +D Q I
Sbjct: 39  PIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI 98


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 193 DGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCR 303
           + G+V+G DSR    +Y+   +T+  T  TDQI   R
Sbjct: 521 ENGIVLGVDSRKKINSYVEKSLTEDETD-TDQIISSR 556


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 17/78 (21%), Positives = 33/78 (42%)
 Frame = +1

Query: 166 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 345
           GT+ +A   +  +VIG + +        +    K+  + + +    +G  AD + + D  
Sbjct: 30  GTTAIALRGNECIVIGVERKNVPKLQNVSNF-QKIAMVDNHVCLAFAGLNADARILIDKA 88

Query: 346 TYHLNFHKMELGDPPLVE 399
                 HK+ L DP  +E
Sbjct: 89  RVEAQNHKLNLADPVSIE 106


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 385 PPLVETAAAIFRELC 429
           PPL++T +++F ELC
Sbjct: 284 PPLIQTLSSLFSELC 298


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 158 IVRELQSWHASLMVESSLELIPVPQQALTSPIES 259
           ++  L SW  SL +     +IP P++ +T P++S
Sbjct: 583 LIGVLSSWLKSLFLSLLDLVIPNPKENITLPVQS 616


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 483 KERSSNLLYTYWWYGAAPSGVNW 551
           KE+   LL  +W +   P+G+ W
Sbjct: 49  KEKHEKLLLLFWLHCKFPNGLEW 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,423
Number of Sequences: 5004
Number of extensions: 39819
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)