Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8k19
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...   156   9e-39
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    82   3e-16
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    66   1e-11
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...    38   0.004
Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical pr...    33   0.10 
Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z83216-9|CAB05678.1|  111|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z82086-8|CAN99701.1|  309|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z82086-7|CAB04996.1|  294|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score =  156 bits (379), Expect = 9e-39
 Identities = 68/125 (54%), Positives = 94/125 (75%)
 Frame = +1

Query: 160 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 339
           STGT+++A E++GGVV+G DSRT+ G++I +R T+K+T ITD +  CRSGSAADTQAIAD
Sbjct: 21  STGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIAD 80

Query: 340 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 519
           I  YH++ + M    P  +  ++ IFR+  YNYR+ L A +LVAGWD++ G Q+Y+IPIG
Sbjct: 81  IAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQVYAIPIG 140

Query: 520 GMVQR 534
           G V R
Sbjct: 141 GFVSR 145


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 43/121 (35%), Positives = 70/121 (57%)
 Frame = +1

Query: 160 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 339
           STGT+I+A  F GG+V+GADSR T G  IA++  +K+ K+T+ IY C +G+AAD   +  
Sbjct: 44  STGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTK 103

Query: 340 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 519
           +++ +L   ++  G    V TA    ++  +NY+  + A +L+ G D   G  +Y     
Sbjct: 104 MLSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYLLIGGVD-PTGPHLYMCSAN 162

Query: 520 G 522
           G
Sbjct: 163 G 163


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
 Frame = +1

Query: 196 GGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKME 375
           GG+++  DSR ++G YI+++   K+  I D++    +G AAD Q    IV  +   +++ 
Sbjct: 81  GGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELR 140

Query: 376 LGDPPLVETAAAIFRELCYNYR-DSLMAGILVAGWDKKKGAQIYSIPI-GGMVQRXAVSI 549
                 V  A+  F    Y YR   L  G +VAG+D KKG QI+ +   G   Q    S+
Sbjct: 141 EKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD-KKGPQIFKVDSEGDRCQLKVCSV 199

Query: 550 G 552
           G
Sbjct: 200 G 200


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
 Frame = +1

Query: 199 GVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKMEL 378
           G+V+ A+ +        + +T+K+ +++D I C  +G  AD   + + + +    ++   
Sbjct: 42  GIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSY 101

Query: 379 GDPPLVETAAAIFRELCYNYRDSLMAG--------ILVAGWDKKKGAQIY-SIPIGGMVQ 531
           G+   VE    + + LC   +     G        +L  GWDK  G Q+Y S P G    
Sbjct: 102 GEEMPVE---QLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTG 158

Query: 532 RXAVSIG 552
             A  IG
Sbjct: 159 WKATCIG 165


>Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical
           protein F39H11.5 protein.
          Length = 236

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +1

Query: 154 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 333
           P  TGTS++A ++  GVV+  D   + G     +   +  K+ D +     G  AD   +
Sbjct: 13  PTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWL 72

Query: 334 ADIV 345
            +++
Sbjct: 73  QNVI 76


>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 6/140 (4%)
 Frame = +1

Query: 151 APHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQA 330
           A +ST  + +A +     VI    R      +A+ VT  + +I+  + CC  G   D + 
Sbjct: 31  AINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTS-VYQISQSVGCCAIGMIPDAKF 89

Query: 331 IADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-----SLMAGILVAGWDKKKGA 495
                       K + G     E  A    +L   Y       SL   +L   +D +KG 
Sbjct: 90  QIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGP 149

Query: 496 QIYSI-PIGGMVQRXAVSIG 552
           ++Y + P G       VS+G
Sbjct: 150 EVYRVDPAGYYRGMKGVSVG 169


>Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical
           protein F02H6.7 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 406 AAIFRELCYNYRDSLMAGILVAGW-DKKKGAQIYSIPIG 519
           A+ FRE  Y+Y   L     VAGW DK    +I   P G
Sbjct: 248 ASNFRESFYSYNYKLEKDSAVAGWIDKAGNCEIADFPTG 286


>Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical
           protein B0365.6 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 23/99 (23%), Positives = 36/99 (36%)
 Frame = +1

Query: 136 PEWMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSA 315
           P W+    S   +  +C++D       D     G Y        L ++ + +Y   SGS 
Sbjct: 79  PYWLGIKCSLSGNPASCQWD-------DQSGNAGGYNGFAPGYPLVEVGNCVYVPTSGSF 131

Query: 316 ADTQAIADIVTYHLNFHKMELGDPPLVETAAAIFRELCY 432
           A      D  T  LNF        P+ +T +  +   CY
Sbjct: 132 AGKWLSGDCNTMSLNFICETAPTSPITDTCSFQYNGNCY 170


>Z83216-9|CAB05678.1|  111|Caenorhabditis elegans Hypothetical
           protein C08F11.11 protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +1

Query: 184 CEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADI 342
           CE+ G + +  DS      YI  +VT      ++ +  CR+ +  +++  AD+
Sbjct: 43  CEYTGDLTVKTDSTCNHSTYIMTKVTPPNESPSNGVAHCRT-APCNSEDYADV 94


>Z82086-8|CAN99701.1|  309|Caenorhabditis elegans Hypothetical
           protein ZK228.4b protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 442 DSLMAGILVAGWDKKKGAQIYSI 510
           ++L+AG+ +A WD K    +YSI
Sbjct: 56  NNLVAGVSLARWDAKNDGPLYSI 78


>Z82086-7|CAB04996.1|  294|Caenorhabditis elegans Hypothetical
           protein ZK228.4a protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 442 DSLMAGILVAGWDKKKGAQIYSI 510
           ++L+AG+ +A WD K    +YSI
Sbjct: 41  NNLVAGVSLARWDAKNDGPLYSI 63


>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
 Frame = +1

Query: 265 KLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKMELGDP----PLVETAAAIFRELCY 432
           K+ +I+  I C  SG   D + +          ++M  G+      LV   AA+ +E   
Sbjct: 60  KVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQ 119

Query: 433 NYR-DSLMAGILVAGWDKKKG 492
           +       A +L+AGWDK  G
Sbjct: 120 SGGVRPFGASLLIAGWDKNPG 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,717,270
Number of Sequences: 27780
Number of extensions: 226023
Number of successful extensions: 523
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)