Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8k18
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    28   1.0  
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.3  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   2.3  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    27   3.1  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.0  
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    26   5.3  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    26   5.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   9.3  

>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 252 MLLVCTLLFTLTHINADSDE---GSISKIGTSVGHTMNIYYCYSCG 380
           +LL C +LF +T  +  S      SI  I T +G   ++YYC++ G
Sbjct: 515 ILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAHG 560


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 456 YDPPGFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMM 623
           Y+  GF MYL  ++GFG  +V     + V  F  ++     WW+  +   L+  ++
Sbjct: 7   YEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIPTWLFVLVI 62


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  WFLKFLKPISIDLYFVLFLFITKLK 112
           W+LK+L P S  + +  FL I+KL+
Sbjct: 337 WWLKYLGPFSYLILYYFFLDISKLQ 361


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 215 YQYVKQYVLPKRDVTRLYFIIYTNSYQ 295
           ++ +  YV+PKR++      + TN YQ
Sbjct: 57  FETISDYVIPKRELCNKTITVCTNHYQ 83


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 497 WFWQNVGHHVYTQRCEY 547
           W WQN+G   YT+ C++
Sbjct: 75  WNWQNLGISRYTKDCDF 91


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 474 NMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAW 581
           N Y+   +GF     ++ +LSG  I   LN P  AW
Sbjct: 46  NWYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLAW 81


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 64  KYRFVFRFVSVHYKIENIRPPKNKY-SVVKRNNH 162
           KYRFVF+F S    + ++   K KY ++++R++H
Sbjct: 769 KYRFVFKF-SPSQPLSSLGKNKEKYDALLERSSH 801


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 483  LSRIIGFGKMLVIMCILSGVNIFAWLNK 566
            +S++  FG  L++  +L G+N + W +K
Sbjct: 1471 MSQLSAFGVKLLLPTLLDGLNEYNWRSK 1498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,546
Number of Sequences: 5004
Number of extensions: 61513
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)