Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8k17
         (667 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2JIE3 Cluster: DNA-binding response regulator; n=14; C...    34   3.5  
UniRef50_Q5S233 Cluster: Mitochondrial associated cysteine-rich ...    33   4.7  
UniRef50_Q5BZV4 Cluster: SJCHGC01027 protein; n=2; Schistosoma j...    33   4.7  
UniRef50_UPI0000EBDE4C Cluster: PREDICTED: similar to keratin as...    33   6.2  
UniRef50_A6QWD9 Cluster: Predicted protein; n=3; Eurotiomycetida...    33   6.2  
UniRef50_Q3JTA3 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  

>UniRef50_Q2JIE3 Cluster: DNA-binding response regulator; n=14;
           Cyanobacteria|Rep: DNA-binding response regulator -
           Synechococcus sp. (strain JA-2-3B'a(2-13))
           (Cyanobacteria bacteriumYellowstone B-Prime)
          Length = 269

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -1

Query: 565 DQLDKKFLRRAYDAHGLPLPPRRRASLEPLADQYGRLRID 446
           D L K F  +  DAH L L  RR+  + P   QYG L+ID
Sbjct: 99  DYLTKPFSMQLLDAHLLALARRRQRHIPPTFLQYGDLKID 138


>UniRef50_Q5S233 Cluster: Mitochondrial associated cysteine-rich
           protein; n=1; Sus scrofa|Rep: Mitochondrial associated
           cysteine-rich protein - Sus scrofa (Pig)
          Length = 104

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 148 PTRCEESPTCYPCLPHCPQSMVYCCDTRPKTPLRRSSCC 264
           P  C   P C P  P C      CC  +P+   +++ CC
Sbjct: 15  PECCPPKPQCCPPKPQCCPPKPQCCPPKPQCCTQQTCCC 53


>UniRef50_Q5BZV4 Cluster: SJCHGC01027 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC01027 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 381

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 178 YPCLPHC-PQSMVYCCDTRPKTPLRRSSCCDSKE 276
           YP  P C P S  YCC   P TP+RR    D+ E
Sbjct: 5   YPIPPMCLPPSGNYCCSHTPPTPIRRPWLGDNSE 38


>UniRef50_UPI0000EBDE4C Cluster: PREDICTED: similar to keratin
           associated protein 9.2; n=1; Bos taurus|Rep: PREDICTED:
           similar to keratin associated protein 9.2 - Bos taurus
          Length = 230

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 103 CGPFAVAPVLVTSS-YPTRCEESPTCYPCLPHCPQSMVYCCDTRPKTPLRRSSCC 264
           C    + P+ VT+   PT CE S  C  C P CPQ+     +T    P   +SCC
Sbjct: 28  CRTTCLKPICVTTCCQPTCCESS--C--CQPSCPQTCCQITETTCCKPTCVTSCC 78


>UniRef50_A6QWD9 Cluster: Predicted protein; n=3;
           Eurotiomycetidae|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 577

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 221 QQ*TIDCGQCGKHG*HVGDSSHLVGYE 141
           +Q T DC  CG HG ++ D SH+V  E
Sbjct: 442 EQWTFDCSGCGVHGENLDDGSHIVACE 468


>UniRef50_Q3JTA3 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia pseudomallei 1710b|Rep: Putative
           uncharacterized protein - Burkholderia pseudomallei
           (strain 1710b)
          Length = 621

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 493 RACEVAAGVRGRRKPFVETSYRADPYDEVHRYHSEDEQ 606
           R  + A G   RR   VET  RA P D +HR+H++ ++
Sbjct: 233 RRADFARGDPARRGSAVETRPRARPVDRLHRHHADRDR 270


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,349,495
Number of Sequences: 1657284
Number of extensions: 12159690
Number of successful extensions: 35099
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35065
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)