Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8k14
         (599 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q92LK8 Cluster: ATP synthase subunit beta; n=32; cellul...    44   0.004
UniRef50_P06576 Cluster: ATP synthase subunit beta, mitochondria...    43   0.006
UniRef50_P00830 Cluster: ATP synthase subunit beta, mitochondria...    42   0.011
UniRef50_Q5FRC5 Cluster: ATP synthase subunit beta; n=266; cellu...    40   0.034
UniRef50_O50341 Cluster: ATP synthase subunit beta; n=23; cellul...    40   0.034
UniRef50_Q5NQY9 Cluster: ATP synthase subunit beta; n=169; cellu...    36   0.55 
UniRef50_Q9C5A9 Cluster: ATP synthase subunit beta-3, mitochondr...    35   1.7  
UniRef50_P13356 Cluster: ATP synthase subunit beta; n=5; Bactero...    34   2.9  

>UniRef50_Q92LK8 Cluster: ATP synthase subunit beta; n=32; cellular
           organisms|Rep: ATP synthase subunit beta - Rhizobium
           meliloti (Sinorhizobium meliloti)
          Length = 504

 Score = 43.6 bits (98), Expect = 0.004
 Identities = 17/27 (62%), Positives = 24/27 (88%)
 Frame = +1

Query: 508 ELDHIPEAAFYMVGTIEDVIAKSQELA 588
           E DH+PEAAFYMVG+IE+ + K+++LA
Sbjct: 474 EYDHLPEAAFYMVGSIEEAVEKAKKLA 500


>UniRef50_P06576 Cluster: ATP synthase subunit beta, mitochondrial
           precursor; n=3027; cellular organisms|Rep: ATP synthase
           subunit beta, mitochondrial precursor - Homo sapiens
           (Human)
          Length = 529

 Score = 42.7 bits (96), Expect = 0.006
 Identities = 17/28 (60%), Positives = 23/28 (82%)
 Frame = +1

Query: 508 ELDHIPEAAFYMVGTIEDVIAKSQELAK 591
           E DH+PE AFYMVG IE+ +AK+ +LA+
Sbjct: 498 EYDHLPEQAFYMVGPIEEAVAKADKLAE 525


>UniRef50_P00830 Cluster: ATP synthase subunit beta, mitochondrial
           precursor; n=14; cellular organisms|Rep: ATP synthase
           subunit beta, mitochondrial precursor - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 511

 Score = 41.9 bits (94), Expect = 0.011
 Identities = 18/25 (72%), Positives = 23/25 (92%)
 Frame = +1

Query: 514 DHIPEAAFYMVGTIEDVIAKSQELA 588
           D+IPE AFYMVG IEDV+AK+++LA
Sbjct: 483 DNIPEHAFYMVGGIEDVVAKAEKLA 507


>UniRef50_Q5FRC5 Cluster: ATP synthase subunit beta; n=266; cellular
           organisms|Rep: ATP synthase subunit beta - Gluconobacter
           oxydans (Gluconobacter suboxydans)
          Length = 487

 Score = 40.3 bits (90), Expect = 0.034
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 508 ELDHIPEAAFYMVGTIEDVIAKSQEL 585
           E DH+PE AFYMVG I++ IAK++++
Sbjct: 458 EYDHLPEGAFYMVGDIDEAIAKAEKM 483


>UniRef50_O50341 Cluster: ATP synthase subunit beta; n=23; cellular
           organisms|Rep: ATP synthase subunit beta -
           Fervidobacterium islandicum
          Length = 472

 Score = 40.3 bits (90), Expect = 0.034
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +1

Query: 514 DHIPEAAFYMVGTIEDVIAKSQELAKS 594
           D +PEAAFYMVGTI++ + K+++L KS
Sbjct: 443 DDLPEAAFYMVGTIDEAVEKAKKLMKS 469


>UniRef50_Q5NQY9 Cluster: ATP synthase subunit beta; n=169; cellular
           organisms|Rep: ATP synthase subunit beta - Zymomonas
           mobilis
          Length = 484

 Score = 36.3 bits (80), Expect = 0.55
 Identities = 13/25 (52%), Positives = 22/25 (88%)
 Frame = +1

Query: 514 DHIPEAAFYMVGTIEDVIAKSQELA 588
           D +PE AFYMVG+I++ +AK++++A
Sbjct: 456 DDLPENAFYMVGSIDEAVAKAEKMA 480


>UniRef50_Q9C5A9 Cluster: ATP synthase subunit beta-3, mitochondrial
           precursor; n=1793; root|Rep: ATP synthase subunit
           beta-3, mitochondrial precursor - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 559

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 13/26 (50%), Positives = 22/26 (84%)
 Frame = +1

Query: 514 DHIPEAAFYMVGTIEDVIAKSQELAK 591
           D + E +FYMVG I++V+AK++++AK
Sbjct: 530 DDLSEQSFYMVGGIDEVVAKAEKIAK 555


>UniRef50_P13356 Cluster: ATP synthase subunit beta; n=5;
           Bacteroides|Rep: ATP synthase subunit beta - Bacteroides
           fragilis
          Length = 505

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +1

Query: 508 ELDHIPEAAFYMVGTIEDVIAKSQEL 585
           E+D++PE AF  VGTIE+ I K ++L
Sbjct: 474 EVDYLPEPAFLNVGTIEEAIEKGKKL 499


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,799,714
Number of Sequences: 1657284
Number of extensions: 6894579
Number of successful extensions: 19788
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19783
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)