Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8k12
         (357 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P61243 Cluster: Protein ycf2; n=1; Physcomitrella paten...    32   2.5  
UniRef50_Q00WM6 Cluster: Ubiquitin-protein ligase 2; n=1; Ostreo...    32   3.4  
UniRef50_Q9JKP9 Cluster: Testis-type galactosyl receptor; n=1; R...    31   4.4  
UniRef50_P28178 Cluster: Protein kinase 2; n=2; Dictyostelium di...    31   5.9  

>UniRef50_P61243 Cluster: Protein ycf2; n=1; Physcomitrella
            patens|Rep: Protein ycf2 - Physcomitrella patens (Moss)
          Length = 2259

 Score = 32.3 bits (70), Expect = 2.5
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -2

Query: 134  SVLERQRSIFVILHSLDCRHVGTRKAKQQLQTFGQRT 24
            ++L+RQ+ I ++L+S   ++  ++K K  L  FG RT
Sbjct: 1699 NILQRQKKISILLYSKYSKYFYSKKKKSSLNEFGSRT 1735


>UniRef50_Q00WM6 Cluster: Ubiquitin-protein ligase 2; n=1;
            Ostreococcus tauri|Rep: Ubiquitin-protein ligase 2 -
            Ostreococcus tauri
          Length = 2639

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 141  LQLGSGAPTFHLCDTAQFRLPPCWNAKGQATAANFWS 31
            L LG G    H  +  Q R   CW+  G+   A+FWS
Sbjct: 2313 LWLGDGTYQAHAPEAFQVRNQTCWSLDGRHARASFWS 2349


>UniRef50_Q9JKP9 Cluster: Testis-type galactosyl receptor; n=1;
           Rattus norvegicus|Rep: Testis-type galactosyl receptor -
           Rattus norvegicus (Rat)
          Length = 246

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 135 LGSGAPTFHLCDTAQFRLPPCWNA 64
           LG G+P   L  TA++R+P CW++
Sbjct: 214 LGMGSPGLRLTSTAKWRMPICWSS 237


>UniRef50_P28178 Cluster: Protein kinase 2; n=2; Dictyostelium
           discoideum|Rep: Protein kinase 2 - Dictyostelium
           discoideum (Slime mold)
          Length = 479

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 171 CIASLGVMLDLQLGSGAPTFHLCDTAQFRLPPCWNAKGQATAANFWS 31
           CI   G+   ++   G  TF  C T ++  P   N  G   A ++WS
Sbjct: 291 CITDFGLSKKIETTDG--TFTFCGTPEYLAPEVLNGHGHGCAVDWWS 335


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,094,289
Number of Sequences: 1657284
Number of extensions: 3993243
Number of successful extensions: 10370
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10369
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11941480628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)