Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8k12
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             30   0.12 
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   2.6  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    24   8.0  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    24   8.0  

>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 8   VLRSPACADQ-KFAAVAWPFAFQHGGSLNCAVSQRW 112
           ++  P C +  K A   WP A Q GG +N + +Q W
Sbjct: 62  IMLGPNCEEAAKTALHTWPGALQIGGGINISNAQNW 97


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 155 VLCWIYNSVLERQRSIFV-ILHSLDCRHV 72
           +LC +YNS+L +QR I + +L    C ++
Sbjct: 1   MLCLVYNSILCKQRRISLKVLQQFRCWNI 29


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 56  WPFAFQHGGSLNCAVSQRW 112
           WPF++   GSL  +VS R+
Sbjct: 109 WPFSWLFPGSLPASVSNRY 127


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 137 NSVLERQRSIFVILHSLD 84
           NS LE QR   ++LHS+D
Sbjct: 19  NSKLENQRLPAILLHSID 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,089,196
Number of Sequences: 5004
Number of extensions: 15833
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)