Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8j19
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1233 - 35594510-35594687,35594985-35595100,35595364-355954...    30   1.7  
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    29   2.2  
10_02_0201 - 6764313-6765263                                           28   6.8  
06_02_0162 + 12466027-12466354,12466894-12467546                       28   6.8  
03_02_0393 - 8075982-8076989                                           28   6.8  
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    27   8.9  
05_07_0239 - 28599452-28599564,28599685-28599799,28600051-286001...    27   8.9  

>01_06_1233 -
           35594510-35594687,35594985-35595100,35595364-35595463,
           35595536-35595603,35596940-35597071
          Length = 197

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 367 IC*NSYIVYFRDHFRSRDASWTSGAGFILDTCTTAVKLSHPV 242
           +C   Y+ YF+  F   + SW+   GF++ + T A+  SHP+
Sbjct: 135 MCWGRYMHYFQS-FGFIEESWSLAFGFLVVSVTAALVESHPI 175


>07_03_1575 -
           27848977-27849095,27849254-27849302,27850270-27850287,
           27850798-27851786,27852119-27852733,27852893-27852921,
           27853990-27854453,27854530-27854654,27854743-27855025,
           27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +2

Query: 56  GVKILLIFCHLKIYFVKCFQNGYN*TKSRDKVSSYEGREGEDIYDELNNVLGECAPSYAT 235
           G ++L +  H ++YF  C       + + D + S     G   +  L NVL  C PSY++
Sbjct: 504 GAEVLGMDPHDRLYFGTCGYILVVESTAEDSLDSTCHYYGIFDHHSLFNVLRTCHPSYSS 563

Query: 236 VKNWVAEF 259
           + N ++ F
Sbjct: 564 ITNMISLF 571


>10_02_0201 - 6764313-6765263
          Length = 316

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 372 RRSAKTAISCTFATISGVVTLLGRPERASSWTHVRPRLNSATQFF 238
           R  +KTA++  FA  S +V  +   ER S+WT  R  L +A+  F
Sbjct: 210 RGLSKTALAIIFALCSRMVCRIYGEERVSAWT--RSALEAASWVF 252


>06_02_0162 + 12466027-12466354,12466894-12467546
          Length = 326

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 197 LTRHRYLPLHALHMKKLYHGSLFNYIHSENT*RNIFSNDKKSI 69
           LT+   L + A   +     S + YIH E+T RNI  N + SI
Sbjct: 82  LTKPVELKIVAKEFENSLKYSGYKYIHQESTDRNIIDNRRHSI 124


>03_02_0393 - 8075982-8076989
          Length = 335

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 372 RRSAKTAISCTFATISGVVTLLGRPERASSWTHVRPRLNSATQFFTVA 229
           R  +KTA++  FA  S +V  +   ER S+WT  R  L +A   F  A
Sbjct: 231 RGLSKTALAIIFALCSRMVCRIYGEERLSAWT--RSALEAAGWVFVAA 276


>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
            29415293-29415416,29416340-29416590,29416923-29418449,
            29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = -3

Query: 411  EIPVVSTISDNFNRRSA---KTAISCTFATISGVVTLLGRPERA---SSWTHVRPRLNSA 250
            E+PV S + D FN  SA   K  I+ T A   G ++L G        S W H + R   A
Sbjct: 1740 ELPVRSDVMDKFNGDSAGKRKVLIASTTACAEG-ISLTGASRLVMLDSEWNHSKTRQAIA 1798

Query: 249  TQF 241
              F
Sbjct: 1799 RAF 1801


>05_07_0239 -
           28599452-28599564,28599685-28599799,28600051-28600116,
           28600270-28600329,28600571-28600617,28601118-28601202,
           28601554-28601646,28601727-28601791,28601942-28602017,
           28602110-28602175,28603082-28603141,28603400-28603489,
           28603594-28603893
          Length = 411

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 146 KVSSYEGREGEDIYDELNNVLGECAPSYATVKNWVAE 256
           +++ Y GR+G  +   + N++G  A S+A V  ++AE
Sbjct: 121 QIAEYIGRKGSLMIAAIPNIIGWLAISFAKVPVYIAE 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,545,524
Number of Sequences: 37544
Number of extensions: 304424
Number of successful extensions: 740
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)