Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8j19
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    54   1e-09
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          27   0.19 
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 53.6 bits (123), Expect = 1e-09
 Identities = 42/150 (28%), Positives = 69/150 (46%)
 Frame = +2

Query: 161 EGREGEDIYDELNNVLGECAPSYATVKNWVAEFNRGRTCVQDEARSGRPRSVTTPEMVAK 340
           +G+     + +L  V G+ A      +NW  +F  G   ++DE RSGRP  V   +++  
Sbjct: 18  KGKNASQAHKKLCAVYGDEALKERQCQNWFDKFRSGDFSLKDEKRSGRPVEV-DDDLIKA 76

Query: 341 VHDIAVLADRRLKLSEIVDTTGISKERVHHIVSEELNI*K*SARWVPRLLTHDQKRIRVQ 520
           + D    +DR     EI +   +S   + + + ++L   +    WVP  L       R+ 
Sbjct: 77  IID----SDRHSTTREIAEKLHVSHTCIENHL-KQLGYVQKLDTWVPHELKEKHLTQRI- 130

Query: 521 NSKECLDRFQSNKADFLRRFVTKDETWVHY 610
           NS + L +   N   FL+R +T DE WV Y
Sbjct: 131 NSCDLLKKRNEND-PFLKRLITGDEKWVVY 159


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 521 NSKECLDRFQSNKADFLRRFVTKDETWVHY 610
           NS + L + +S    FL+R +T DE WV Y
Sbjct: 10  NSCDLLKK-RSENDPFLKRLITGDEKWVVY 38


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 224 KEHIHPKHYLTRHRYLPL-HAL 162
           ++  H  HYLTR R + + HAL
Sbjct: 24  EKEFHYNHYLTRRRRIEIAHAL 45


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 521 NSKECLDRFQSNKADFLRRFVTKDETWV 604
           NS + L +   N   FL+R +T DE WV
Sbjct: 10  NSCDLLKKRNENDP-FLKRPITGDEKWV 36


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 562 RFFTSICNKR*NMG 603
           +FFT  CN + N G
Sbjct: 213 KFFTDYCNSKTNTG 226


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 562 RFFTSICNKR*NMG 603
           +FFT  CN + N G
Sbjct: 213 KFFTDYCNSKTNTG 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,762
Number of Sequences: 438
Number of extensions: 4056
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)