Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8j15
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    28   5.1  
06_03_0909 - 25870852-25870933,25871175-25871336,25871437-258715...    27   8.9  

>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
            6069207-6069291,6069421-6069580,6069667-6069743,
            6069848-6069898,6069979-6070069,6070167-6070468,
            6070549-6070830,6070911-6071388,6071457-6071560,
            6071647-6071809,6071895-6072017,6072099-6072217,
            6072304-6072636,6072713-6073003,6073088-6073171,
            6073260-6073393,6073478-6073705,6073795-6073966,
            6074062-6074316,6074408-6074668
          Length = 1444

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 567  IFVFHISHGLIIGRPFTFRFTIDSL---KFFYLEQFLFLRFYGLMS 439
            IF+  + +GLI+     F +T++      FF    F++  FYG+M+
Sbjct: 1281 IFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMA 1326


>06_03_0909 -
           25870852-25870933,25871175-25871336,25871437-25871558,
           25871762-25871982,25872537-25872675,25873290-25873513,
           25873830-25873941,25874411-25874611,25874686-25874853
          Length = 476

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +1

Query: 238 IISSDFPKYNPQPWKFMEGKSRI----EWLLSYEYQRMWLDEREAWKKRMYPENTTVNVD 405
           I+    P YN     +MEG+S      +W + Y+   ++     A+++     N   N+ 
Sbjct: 307 IVLMHSPMYNSNEAHYMEGESMRAAFEKWFVKYKVDLVFAGHVHAYERSYRISNINYNIT 366

Query: 406 IVKRYVLTFKTA 441
              RY +  K+A
Sbjct: 367 SGNRYPVPDKSA 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,414,426
Number of Sequences: 37544
Number of extensions: 250849
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)