Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8j15
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79694-4|CAB01963.1|  398|Caenorhabditis elegans Hypothetical pr...    31   0.86 
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    28   4.6  
Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    28   6.0  

>Z79694-4|CAB01963.1|  398|Caenorhabditis elegans Hypothetical
           protein C15A11.4 protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 289 EGKSRI-EWLLSYEYQRMWLDEREAWKKRMYPENTTVNVDIVKRY 420
           E  S+I +W   Y  +   LDE+ A K + +PEN TV+  +  +Y
Sbjct: 17  ESNSKILKWCKKYLLEGQQLDEKHAEKVQNFPENPTVSDFVFIKY 61


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 391 LYFLDTYAFSMLLFHLTTCVDIHMIATIRYVIYLP 287
           L++L T+ F   +  +T+C+ I ++ ++R   YLP
Sbjct: 179 LFYLSTFIFLNCMLIVTSCLYIPIMISVRKFSYLP 213


>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -2

Query: 550 KPWPYHRQTVYFSFYYRFPQIFLS*TVSFFAFLWLDEQF*KLKHIVLQCQRLL 392
           +P P+H  T      Y    +F S T++FF  L  ++   K+  ++   ++++
Sbjct: 750 RPQPFHFTTFIQMIRYTVEAVFASYTIAFFFSLAFEKPLNKIDEMLFNSKKMM 802


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -2

Query: 550 KPWPYHRQTVYFSFYYRFPQIFLS*TVSFFAFLWLDEQF*KLKHIVLQCQRLL 392
           +P P+H  T      Y    +F S T++FF  L  ++   K+  ++   ++++
Sbjct: 750 RPQPFHFTTFIQMIRYTVEAVFASYTIAFFFSLAFEKPLNKIDEMLFNSKKMM 802


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,648,685
Number of Sequences: 27780
Number of extensions: 257931
Number of successful extensions: 687
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)