Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8j06
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 61 9e-11
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 28 1.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.1
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 27 1.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 26 4.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 5.6
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 7.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 7.4
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 25 7.4
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 25 9.8
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 25 9.8
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 9.8
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 9.8
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 9.8
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 9.8
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 61.3 bits (142), Expect = 9e-11
Identities = 28/70 (40%), Positives = 40/70 (57%)
Frame = +3
Query: 342 ELSSKISNVTNTIPELQFEEEDEALYSNKELPDHACKYCGIHDPATVVMCNICNKWFCNG 521
++SS +S+ N E E + E L K+ + C YC I +P +++ C CNKWFCN
Sbjct: 10 DISSLVSS-KNMTSENGLEHQFEELLVEKQYSEEHCAYCHIKNPNSILKCLHCNKWFCNV 68
Query: 522 RGNTSGSHII 551
RG + SHII
Sbjct: 69 RGKSGASHII 78
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 27.9 bits (59), Expect = 1.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 405 DEALYSNKELPDHACKYCGIHDP 473
++ALY +K P C + G+H P
Sbjct: 406 EKALYKDKNCPVRPCSFNGVHQP 428
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.1
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 189 ETEEGDFIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSSSNQVNGIGRIELSSKISNV 368
ETE+ DT+ F T+ P+ SQ+Q + L+S+++V+ + LS++ S+
Sbjct: 87 ETEDLPSFNGDTEEKPFIKTEEGAPASSQSQVVVSSN-LTSNSEVSKLEEERLSTR-SHS 144
Query: 369 TNTIPELQF-EEEDEALYSNKEL 434
P + F +E+ A N EL
Sbjct: 145 QEIKPIVDFGPDEETAKELNTEL 167
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = -1
Query: 458 TVFTSMIWKFLVAVQSLIFLFELQLRYRISHVRDFRRQFYTS 333
T+ + +W L + + F+ ++ R ++++ RDF FY +
Sbjct: 161 TLNSGYLWMVLNCLTNAAFVLAMRKRIKLTNFRDFDTMFYNN 202
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.4
Identities = 22/79 (27%), Positives = 30/79 (37%)
Frame = +3
Query: 129 SSLKMSVEAFDPSSQSLTFLETEEGDFIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLS 308
S L S F P+S T TE + + S LPS + + S LS
Sbjct: 112 SQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAI------LPSSTSVEVSISSSSLS 165
Query: 309 SSNQVNGIGRIELSSKISN 365
SS+ + LSS S+
Sbjct: 166 SSDPLTSSTFSSLSSSTSS 184
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 358 ILDDNSIRPIPLTWLDEDNPWSC 290
ILD SI P+PLT + + W C
Sbjct: 113 ILDSKSIHPLPLTDGEVLHRWEC 135
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +3
Query: 189 ETEEGDFIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSSSNQVNGIGRIELSSKISNV 368
+TE GD IGA +++L SQ + + + S + + ++ S K N+
Sbjct: 1222 DTENGDIIGAQRPVRNRSAVNYSLHSQLCEKFNVQESLDSIDDLIEKFEKLSSSEKNDNL 1281
Query: 369 TNTI 380
+N I
Sbjct: 1282 SNLI 1285
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 202 PSSVSRNVSDCELGSNASTLIFNDEFKQ 119
P S +++ GSNAS L+ ND KQ
Sbjct: 1434 PKSAKSLLAELTNGSNASNLVENDRQKQ 1461
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 495 CYT*RLWPGRVCHSIYKHDLEVPCCCTK 412
CYT L ++ +I+ +D +P CC K
Sbjct: 366 CYT--LLFKKITEAIHNNDTPIPLCCAK 391
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 181 VSDCELGSNASTLIFNDEFKQTKLIQKKIY 92
+ EL N + + ND F + L+Q K+Y
Sbjct: 810 IESSELNFNLKSAVKNDNFPEFLLVQWKLY 839
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -3
Query: 450 YKHDLEVPCCCTKP 409
YKH V CCC P
Sbjct: 293 YKHGFSVSCCCWLP 306
>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 429 PCCCTKPHLPLRIAAPVSY*SR*RF*TTILY 337
P CT+ HLP + VS+ ++ + TT Y
Sbjct: 190 PLLCTRTHLPSKYFTSVSWMTQMFYYTTYFY 220
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +3
Query: 201 GDFIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSSSN 317
GDF+ D GS F T P ++ T LS +N
Sbjct: 72 GDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMAN 110
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 24.6 bits (51), Expect = 9.8
Identities = 5/20 (25%), Positives = 13/20 (65%)
Frame = +3
Query: 453 YCGIHDPATVVMCNICNKWF 512
+C + + ++ C IC++W+
Sbjct: 1100 FCRLPESGVMIECEICHEWY 1119
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 60 LLWKYQPIVVLYIFFWINFVCL 125
L W + ++ ++I FWI+F+ L
Sbjct: 1414 LSWLKRCVISIFIVFWISFIPL 1435
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 214 PIKS-PSSVSRNVSDCELGSNASTLIFNDEFKQT 116
PI S PS+ S +++D G S+ F D+ QT
Sbjct: 465 PISSKPSTSSPDMTDAATGGRVSSSSFRDKILQT 498
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 24.6 bits (51), Expect = 9.8
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 222 TQGSEFEFTDFTLPSQSQTQASQHDHGLSSSN-QVNGIGRIELSSKISNVTNTIPELQFE 398
+ GS + T PS ++ LS S IE + S+ TI E+Q E
Sbjct: 1208 SNGSPTSWNLLTKPSPRSASLPKNSQPLSISEIMTEQKEEIESQKRRSSFRKTIEEIQQE 1267
Query: 399 EEDEALYSNKEL 434
EE + + + L
Sbjct: 1268 EEFQKWWEEESL 1279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,008
Number of Sequences: 5004
Number of extensions: 48089
Number of successful extensions: 155
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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