Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8j06
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 447 CKYCGIHDPAT 479
           CK+ GIH+P T
Sbjct: 351 CKWMGIHEPET 361


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 66  WKYQPIVVLYIFFWI-NFVCLNSSLKMSVEA 155
           WKY  +V+  IF WI    C+  ++ + ++A
Sbjct: 539 WKYVAMVLDRIFLWIFTVACVLGTVLIILQA 569


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 447 CKYCGIHDPAT 479
           CK+ GIH+P T
Sbjct: 351 CKWMGIHEPET 361


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 60  LLWKYQPIVVLYIFFWINFVCLNSSLKMSVEAFDPSSQSLTFLETE 197
           L+  Y P V+L +  W++F     +    V     +  ++TFL  E
Sbjct: 217 LIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLE 262


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 17  EFSSRFVCRLNNCVTAMEISANSRSIYFL 103
           E  SRF+  + +  T  ++     SIYFL
Sbjct: 345 ETKSRFISGIRSEQTIFDVKPEFGSIYFL 373


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 169 ELGSNASTLIFNDEFKQTKLIQK 101
           ELG   S ++FN E +  K IQ+
Sbjct: 332 ELGCLRSIILFNPEVRGLKSIQE 354


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 169 ELGSNASTLIFNDEFKQTKLIQK 101
           ELG   S ++FN E +  K IQ+
Sbjct: 332 ELGCLRSIILFNPEVRGLKSIQE 354


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 66  WKYQPIVVLYIFFWI 110
           WKY  +V+  +F WI
Sbjct: 511 WKYVAMVLDRLFLWI 525


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 66  WKYQPIVVLYIFFWI 110
           WKY  +V+  +F WI
Sbjct: 511 WKYVAMVLDRLFLWI 525


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 66  WKYQPIVVLYIFFWI 110
           WKY  +V+  +F WI
Sbjct: 506 WKYVAMVLDRLFLWI 520


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,426
Number of Sequences: 438
Number of extensions: 3151
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)