Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8j03
(258 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 0.31
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 27 0.54
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 26 0.95
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 25 1.3
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 25 2.2
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 2.2
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 24 2.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 23 6.7
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 23 8.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 23 8.9
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 23 8.9
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po... 23 8.9
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.5 bits (58), Expect = 0.31
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 144 KIIRDNKNLLSLTSSVSSFHICY 76
K+I ++ LL +TSSVSSF C+
Sbjct: 373 KVISIDEALLDITSSVSSFQDCF 395
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 26.6 bits (56), Expect = 0.54
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 21 MLIWCIGLRKFIIKDGLKDSKYGMKKQSWLRIV 119
M+I C+G I+ D ++ S + MKK + +V
Sbjct: 120 MIIECVGWNGMIVSDKMRKSVFHMKKNDRIVLV 152
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.8 bits (54), Expect = 0.95
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 230 LFIKHYTQSSKYVHEYCTGNIQQTND 153
++IK Y +KYV Y G +QT +
Sbjct: 110 MYIKEYPPLTKYVSLYAEGTSEQTEE 135
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 25.4 bits (53), Expect = 1.3
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +2
Query: 89 NEETELVKDSKFLLSRIIFWGRHLFAVC 172
+E +V +S+ + +R+IFW + ++ +C
Sbjct: 49 SEFNYIVNESQNVSTRLIFWNKWIYILC 76
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 24.6 bits (51), Expect = 2.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 123 FCYHGLFFGVVICLLYVSCAIFMYVFG*LCVM 218
FC G F G + I+MY FG C+M
Sbjct: 839 FCIFGWFKGGHQTSIVAVLRIWMYSFGIFCIM 870
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 24.6 bits (51), Expect = 2.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 107 PALFLHSIFAILEAVFNNELSQANAPDQHKTRPI 6
PAL + I ++ A+F+ + + ANA + K R I
Sbjct: 434 PALIVGIIACLIFAIFHVQQTTANAVEHFKLRKI 467
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 24.2 bits (50), Expect = 2.9
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = +3
Query: 123 FCYHGLFFGVVICLLYVSCAIFMYVFG*LCV 215
FC++G + C +Y++ F+ + G +C+
Sbjct: 275 FCFYGYVLWLCWCTMYLTHHYFVDLVGGMCL 305
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 2 D*LVAFYADLVHWLE 46
D VA Y VHWLE
Sbjct: 827 DEAVAIYTTFVHWLE 841
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 22.6 bits (46), Expect = 8.9
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +2
Query: 17 FYADLVHWLEKVHY 58
F+ D+ WL+ +HY
Sbjct: 103 FFGDVTLWLDYIHY 116
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 22.6 bits (46), Expect = 8.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 153 VICLLYVSCAIFMYV 197
++C +Y+S ++F Y+
Sbjct: 2007 IVCSVYISASLFWYI 2021
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 253 FXNLQSTLYL*NITHNHPNTYMNIAQETY 167
F +L S L + HN P +++++ TY
Sbjct: 428 FTDLPSNNELFSFIHNIPKEFLHLSDSTY 456
>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 295
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 175 ETYSKQMTTPKN 140
ETYS+Q++ PKN
Sbjct: 101 ETYSEQVSLPKN 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,160,275
Number of Sequences: 5004
Number of extensions: 22809
Number of successful extensions: 57
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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