Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8i22
(464 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 30 0.71
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 2.2
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 2.2
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 3.8
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 28 3.8
AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical ... 27 5.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 27 6.6
U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical p... 27 6.6
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 27 6.6
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 30.3 bits (65), Expect = 0.71
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 323 SFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 436
S GAR PSRA + R P K P APAY++
Sbjct: 381 SVGARAPSRAPAPSSTSRETRSTRRSPSKGPSAPAYTL 418
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -3
Query: 426 AGARGSFIGGQRSGACEPGPGARVAARDGNLAPKLQAGADTSP 298
AGA G+ GGQ G C PGP VA G + GA +P
Sbjct: 92 AGA-GASSGGQCEGCCNPGPPG-VAGNPGKPGKPGKPGAPGNP 132
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 139 RPRRVPAAHDGRPPAARPIALP 204
RP +PA+ RPPA+ P+ +P
Sbjct: 101 RPPPIPASPPPRPPASEPVGIP 122
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 139 RPRRVPAAHDGRPPAARPIALP 204
RP +PA+ RPPA+ P+ +P
Sbjct: 323 RPPPIPASPPPRPPASEPVGIP 344
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +2
Query: 341 PSRAATRAP--GPGSHAP----ERCPPMKDPRAPAYSMGARLGF 454
PSRA +P P +H P RCPP PR P+ + + F
Sbjct: 240 PSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDPIAF 283
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +2
Query: 341 PSRAATRAP--GPGSHAP----ERCPPMKDPRAPAYSMGARLGF 454
PSRA +P P +H P RCPP PR P+ + + F
Sbjct: 240 PSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDPIAF 283
>AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical
protein Y55F3AR.2 protein.
Length = 254
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 341 PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLG 451
P+ A RA G G+ R PP PRA S G RLG
Sbjct: 217 PAPGAPRAGGSGAGGAPRPPPPAGPRAFGGS-GQRLG 252
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +1
Query: 85 YLYSYIIKIQHGKKTFRARPRRVPAAHDGRPPAARPIALPEPH 213
Y ++Y+ T+ P P H +PP A P L PH
Sbjct: 51 YNHNYMAHAASIAHTYGGYPPPYPYQHPHQPPPAHPHHLQHPH 93
>U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical
protein F41G3.2 protein.
Length = 320
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2
Query: 463 SRCEAESSAHGVGRSAGVLHRGAALGSVRARPWGASSRARRKPGAEAPGGRGHES 299
S E S+H + V G+ +G+ RA+RKPG+ P H S
Sbjct: 127 SPIERSHSSHNIHHMKSVESSYHLSGAYGNANYGSMPRAQRKPGSYQPQMHDHRS 181
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 341 PSRAATRAPGPGSHAPERCPP 403
P+RAA RAPGP P P
Sbjct: 112 PTRAAPRAPGPSGPPPSASAP 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,551,881
Number of Sequences: 27780
Number of extensions: 155143
Number of successful extensions: 687
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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