Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8i18
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 28 1.3
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 28 1.3
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.7
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 27 2.9
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|... 27 2.9
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 27 2.9
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 2.9
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 3.9
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 25 6.8
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 9.0
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 25 9.0
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 25 9.0
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 27.9 bits (59), Expect = 1.3
Identities = 8/31 (25%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 331 CTGITGMCYFQYTWRL-PLYGSVAAIILLGV 420
CTG+TG+C+ +++ + P+ ++ ++L+ +
Sbjct: 128 CTGLTGLCFATFSYEVSPVVSVLSGVLLISL 158
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 357 LPVHMATSAVWFGSCYYTVRSGVDVISILESLGVT 461
LPV V++ + Y+ ++ G + +L SLG T
Sbjct: 220 LPVQFGVGRVYYSAAYHALKRGTANMDVLVSLGST 254
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 239 SDETMYFNERSRETQAGRREKSWFDPEI*RNVQG 340
SD F+ + R T+ G+R + F I N+QG
Sbjct: 271 SDSQQSFHHKGRNTRKGQRHNNGFYRNIANNIQG 304
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 168 SSKVCCHHNFVNRPLLDFQQVSFSVTRPCTSMN 266
S K+ N +NRP+LD SFS +R S N
Sbjct: 175 SPKLGSPFNHINRPVLDRSPSSFSQSRSAVSGN 207
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 138 IGKNYPIRILSSKVCCHHNFVNRPLLDFQQVSFSVTRPCTSMNDQEKPKREEEKK 302
+G PI + SK+ H + P ++VSFS+T + +D+ K +K
Sbjct: 53 LGNTSPIINVESKIPFHRRANSTPEESRKRVSFSLTSNDGAKSDRSSQKSSNSRK 107
>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 222
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -1
Query: 288 PAWVSLDRSLKYMVSSLKSLLAGNPVMAYSQNCDGNKLYLKEFE 157
P+ +S+ M S+K+ G P+ + + DGN ++ EF+
Sbjct: 178 PSTLSISIPYTKMSFSIKNYYNGQPLRYFCKTRDGNVIFAVEFD 221
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 358 FQYTWRLPLYGSVAAIILLGVGWTSLV 438
+Q W+ L + +ILLGVGW+ L+
Sbjct: 291 WQKLWKAVLEVDLFGLILLGVGWSILL 317
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 255 TSMNDQEKPKREEEKKVGLIQRFKEMYRDYWYVLLPVHMATSA 383
+++ D+ E KV ++ ++YRD W+ LL VH SA
Sbjct: 187 SNVRDERLYHSFRENKVKFLR--PDLYRDEWFNLLTVHQNHSA 227
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 216 DFQQVSFSVTRPCTSMNDQEKPKREEEKKVGLIQRFKEMYR--DYWYVLLP 362
D QQ +++ T Q+KP R E +++ +Q+F Y+ Y Y + P
Sbjct: 412 DSQQAAYAAVCGKTRSPHQKKPLRVEFRQLRPMQQFSPQYQYPSYPYPMFP 462
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 303 LFSLLPAWVSLDRSLKYMVSSLKSLL 226
LF + AW S D + +V SLKS+L
Sbjct: 10 LFGVCLAWTSSDLEIFRVVDSLKSIL 35
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 9.0
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +3
Query: 84 LYRNCYNIRNLIKPVKWDIGKNYPIRILSSKVCCHHNFVNRPLLDFQQVSF 236
LY ++ RN K NY RILSSKV C D Q +F
Sbjct: 232 LYLGEHDFRNFCKIDASKQITNYHRRILSSKVICIDPSTGLYAFDLQGTAF 282
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -2
Query: 437 TNDVHPTPNSIIAATEPYSGSRHVYW 360
+N V PTP I+ TE + +W
Sbjct: 76 SNSVAPTPGGILQETEKIPSKKVAFW 101
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 66 PLYEILSNYLNILFS*KSNFKL 1
PLYE ++L+ F KSNF +
Sbjct: 268 PLYEYFKSFLDDFFGKKSNFHI 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,415
Number of Sequences: 5004
Number of extensions: 54997
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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