Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8i15
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    58   5e-10
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    28   0.44 
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    27   1.0  
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...    26   2.4  
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    26   2.4  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   4.1  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   5.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   7.2  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    24   7.2  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    24   9.5  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    24   9.5  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 58.0 bits (134), Expect = 5e-10
 Identities = 33/96 (34%), Positives = 53/96 (55%)
 Frame = +2

Query: 8   LMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNKLF 187
           L+E  DE + E      +Q+ + R+Q    +W+ KR  ENA RAA++  PLP +D  ++F
Sbjct: 254 LLESTDEFHYEQGNLGFHQRQLAREQAKIQQWIAKRKAENANRAAENLQPLPLDDWKRIF 313

Query: 188 KPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKL 295
           K    P  L+ ++++ QI   S  I +  S  L+KL
Sbjct: 314 KLPAEPRLLDSLLISSQI-MKSTQIDEQSSAFLSKL 348


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 155 PLPEEDVNKLFKPHPVPPRLNPMIVAGQIDTY 250
           PL +E+  +L+ P PV   + P    G ID Y
Sbjct: 503 PLYDEEATQLYTPKPVVANIVPKNAYGNIDLY 534


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 137 AAKDETPLPEEDVNKLFKPHPVPPRLNPMIVA 232
           AA    P PEED+ K+F  H +  +  P+I +
Sbjct: 220 AAGITAPKPEEDLEKVFSSHGLTDKSVPIITS 251


>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 86  QDKHR-WMVKRAQENAARAAKDETPLPEEDVNKLFKPHPVPPRL 214
           ++KH  W V        RAA++   L E+D  +LF+ + +  RL
Sbjct: 37  RNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRL 80


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 86  QDKHR-WMVKRAQENAARAAKDETPLPEEDVNKLFKPHPVPPRL 214
           ++KH  W V        RAA++   L E+D  +LF+ + +  RL
Sbjct: 37  RNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRL 80


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 89  DKHRWMVKRAQENAARAAKDETPLPEED 172
           D+HR   K+ QE   ++ KDE  L E +
Sbjct: 157 DRHRSSFKKLQEKKDKSLKDEKKLYEAE 184


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 17/91 (18%), Positives = 33/91 (36%)
 Frame = +2

Query: 2   RSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNK 181
           +S++    +LN  A+    +    +          + ++  N       ET LP  D+ +
Sbjct: 513 KSVIPEYSKLNVTAVNLTNHSYWNLASPNKTIDGTIIKSTTNVYLKVNSETSLPTGDIVE 572

Query: 182 LFKPHPVPPRLNPMIVAGQIDTYSQHISQFC 274
                  P +L+P I         +  S+FC
Sbjct: 573 WQNDITKPTKLDPNISFDNCFIVDREASKFC 603


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 59   YQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNKLFK 190
            Y+  +  QQ    RW +   + N  R AKD +P    + +  ++
Sbjct: 935  YRIGLTEQQMRIDRWNIFEERANLLRKAKDPSPKSASESSSFYQ 978


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 53  NRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNKLFKPHPVPP 208
           NR++ L+      K         ++A+ A ++ET +   D     KP P PP
Sbjct: 430 NRWKSLLQEISSQKQLSTDASQTQDASIANENETEIASLDEGSESKPTPSPP 481


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 PHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKLYLTQ 307
           PH V   ++  I +G+I  + +H+S F  Q L   Y T+
Sbjct: 95  PHQVGKPISKGINSGRIQFFDKHLSMF-PQDLLYGYYTR 132


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -1

Query: 264 LICWLYVSICPATIIGFNLG 205
           ++C+  + + P T++G++LG
Sbjct: 559 MLCYRSLGVRPVTLVGYSLG 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,306
Number of Sequences: 5004
Number of extensions: 27501
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)