Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8i15
(390 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 93 9e-20
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 31 0.32
05_07_0262 + 28769335-28769391,28769732-28769855,28770175-287702... 28 3.0
04_03_0661 - 18468244-18469580,18469610-18469619 27 4.0
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 27 4.0
09_06_0232 - 21737299-21739233 27 5.3
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 27 7.0
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793... 27 7.0
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552 27 7.0
09_02_0483 + 9796395-9796409,9796754-9797251 26 9.2
03_01_0235 - 1842909-1843498,1844380-1844569 26 9.2
01_06_0475 + 29610268-29610711 26 9.2
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 92.7 bits (220), Expect = 9e-20
Identities = 47/100 (47%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Frame = +2
Query: 20 VDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDV-NKLFKPH 196
+D+L+ E KF Y + V RQQ + W+ KR QEN AR A E PLPEED N +FKP
Sbjct: 246 MDDLSSEQNKFQYYYRNVSRQQSQQQAWLQKRRQENMARKAAGEEPLPEEDPSNPIFKPI 305
Query: 197 PVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKLYLTQALQ 316
P P RL +V QI +Y HI+ Q+ +LYL +ALQ
Sbjct: 306 PEPSRLEGYLVTNQISSYCNHINGVAGQNFNRLYLMKALQ 345
>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 31.1 bits (67), Expect = 0.32
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Frame = +2
Query: 2 RSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNK 181
++ M++V +LNQ+ + +QQ V +QQQ + + ++ Q + A P++ ++
Sbjct: 956 QNFMQQVQQLNQQMV---LWQQQVQQQQQQQQQQQQQQQQLQLQQHALPVQQQPDQKYSQ 1012
Query: 182 LFKPHPVPPRLN-PMIVAGQIDTYSQHI--SQFCSQSLAKLYLTQALQNAKEAKQ 337
L N P + Q+D S+ + Q Q ++YL Q Q ++ +Q
Sbjct: 1013 LPSSGDTRHEQNKPQKLESQMDHQSELVQQQQVYFQQQQQMYLMQQQQMYQQQQQ 1067
>05_07_0262 +
28769335-28769391,28769732-28769855,28770175-28770266,
28770673-28771078,28772057-28772184,28772273-28772332,
28772814-28772963,28772999-28773061,28773062-28773217,
28773361-28773572,28773698-28773796,28774343-28774512,
28774592-28775040
Length = 721
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 161 PEEDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLA 289
P++ +++ + H VP R+N + + +D Y H SQ +Q+ A
Sbjct: 607 PQQQISQAYGYHQVPARMNCVEQSQAMDAYKMH-SQSQTQAYA 648
>04_03_0661 - 18468244-18469580,18469610-18469619
Length = 448
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 44 IKFNRYQQLVVRQQQDKHRWMVKRAQEN-AARAAKDETPLPEEDVNK 181
I+ + ++ +Q++ + +++ K+ QE AARAA++E EE+ +
Sbjct: 82 IQRRKEEEKAEKQRRKEAKYLAKKMQEEEAARAAEEERKRKEEEAKR 128
>03_03_0246 +
15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/60 (20%), Positives = 31/60 (51%)
Frame = +2
Query: 2 RSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNK 181
R ++ + +E + I+ +Q +V ++ W+ ++ + AA+ A+++ EE+ K
Sbjct: 495 REIVRKQEEERERLIREEEERQRLVEEEARHAAWLAEQERLEAAKRAEEQRIAREEEKRK 554
>09_06_0232 - 21737299-21739233
Length = 644
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 3 AVSWNVLMN*IKKRSSSIGTNSWWSGSNKTSIVGW 107
AVSW ++ + KR+S W+ + SI+ W
Sbjct: 277 AVSWTSMLCALAKRASIDAARDWFEQIPEKSIISW 311
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 143 KDETPLPEEDVNKLFKPHPVP 205
KD++ + +D NKL K PVP
Sbjct: 762 KDDSTVKSDDYNKLLKEFPVP 782
>11_06_0542 +
24777453-24777632,24777654-24778478,24778576-24779319,
24779422-24780354,24780456-24780938,24780969-24781082,
24781240-24781636,24781732-24782024,24782392-24782802
Length = 1459
Score = 26.6 bits (56), Expect = 7.0
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Frame = +2
Query: 86 QDKHRWMVKRAQENAARAAKDE-----TPLPEEDVNKLFKPHPVP-PRLNPMIVAGQIDT 247
QD H A+EN AAKDE P+ +++ + P P M+ QI+
Sbjct: 543 QDDHASAANEAKENKPLAAKDEAKENKAPVAKDEAKENKAPPPTTISTATTMLGKDQIEE 602
Query: 248 YSQHISQFCSQSL 286
Q + Q Q L
Sbjct: 603 IIQKVKQQVLQGL 615
>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
Length = 471
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 151 DPVAXXXXEQTL*TSSSPAKVESYDRSR 234
+P+A E + TSSSP VES D +R
Sbjct: 294 EPIADPQDENAVATSSSPHVVESSDANR 321
>09_02_0483 + 9796395-9796409,9796754-9797251
Length = 170
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 220 RIQPWRDWMRFKEFVHVFFWQRGLIFSSPSSIFLCPLHH 104
+I WR +RF E V + G +F SPS +C H+
Sbjct: 9 QIDIWR--VRFGETVRDALKRNGTLFLSPSQASMCRSHY 45
>03_01_0235 - 1842909-1843498,1844380-1844569
Length = 259
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 71 VVRQQQDKHRWMVKRAQENAAR 136
V +QQQ++ RW K +QE +R
Sbjct: 142 VRQQQQERRRWRTKGSQEGRSR 163
>01_06_0475 + 29610268-29610711
Length = 147
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 175 EQTL*TSSSPAKVESYDRSRTNRHIQPTYKP 267
EQT+ TSSSP+ + S SR++ T+ P
Sbjct: 44 EQTVETSSSPSPMSSSPPSRSSTRATLTHSP 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,453,954
Number of Sequences: 37544
Number of extensions: 184416
Number of successful extensions: 572
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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