Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8i12
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   3.2  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    24   3.2  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    23   7.4  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/57 (21%), Positives = 25/57 (43%)
 Frame = +3

Query: 3   SLKTFNLDLYFYYYQTCHKYMECVF*YIYLQNILYVAGFKMYNIKHLTFAFQPFIEK 173
           S+ +  L  + ++   C+ Y  C      L  +  +  + +Y  + +T    PF+EK
Sbjct: 54  SIYSHTLHFFHHFTIACYHYSLC------LSLVALLLFYTLYPFQSITLPLMPFLEK 104


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 187 FTRIYFSIKGWNANVKCLILYILNP 113
           FT +Y+ I GW        L  +NP
Sbjct: 15  FTDVYYKISGWREQEGIFKLLSVNP 39


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 125 VQY*AFNICIPAFY*KINSCKLKKK 199
           +++  +N C+  F+  I + KLKK+
Sbjct: 332 MEFPTYNECVDEFFSSIEAQKLKKR 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,747
Number of Sequences: 5004
Number of extensions: 10863
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)