Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8i12
         (199 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   3.2  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          19   7.5  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          19   7.5  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    19   7.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    19   7.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    18   9.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    18   9.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    18   9.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +2

Query: 59  IYGMCILIYILT 94
           +YG C+L+ +L+
Sbjct: 220 VYGPCVLLVVLS 231


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 170 KINSCKLKKK 199
           +INSC L KK
Sbjct: 8   RINSCDLLKK 17


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 170 KINSCKLKKK 199
           +INSC L KK
Sbjct: 8   RINSCDLLKK 17


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 59  IYGMCILIYILTE 97
           +YG+ + IY+ T+
Sbjct: 144 LYGLIVAIYLYTK 156


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 170 KINSCKLKKK 199
           +INSC L KK
Sbjct: 129 RINSCDLLKK 138


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/19 (31%), Positives = 9/19 (47%)
 Frame = +2

Query: 59  IYGMCILIYILTEYTLCSW 115
           + G C+L  +  E    SW
Sbjct: 450 VSGFCLLFLMFFECIAISW 468


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/19 (31%), Positives = 9/19 (47%)
 Frame = +2

Query: 59  IYGMCILIYILTEYTLCSW 115
           + G C+L  +  E    SW
Sbjct: 503 VSGFCLLFLMFFECIAISW 521


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 21  LDLYFYYYQTCHKYMECVF*YIYLQNILYVAGFKMYN 131
           LD   Y    C +Y      ++YL      + F+MY+
Sbjct: 710 LDRLHYETDPCVRYYPRRKEWLYLHRARSESEFEMYH 746


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,503
Number of Sequences: 438
Number of extensions: 730
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)