Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8i08
         (383 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4BCX8 Cluster: Putative uncharacterized protein; n=2; ...    31   5.7  
UniRef50_Q4RZF6 Cluster: Chromosome 3 SCAF14932, whole genome sh...    31   9.9  

>UniRef50_A4BCX8 Cluster: Putative uncharacterized protein; n=2;
           Reinekea sp. MED297|Rep: Putative uncharacterized
           protein - Reinekea sp. MED297
          Length = 381

 Score = 31.5 bits (68), Expect = 5.7
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -1

Query: 140 YYLPLRCLTMVLIIVVSTTFLINFFL*NIVRTAMINSFLKTD 15
           + LP++ L + + I++  T L+NFFL  ++ T  +  FL+ +
Sbjct: 139 FILPIKGLVIFMPIILGGTLLLNFFLDGVIPTLRLLFFLEDE 180


>UniRef50_Q4RZF6 Cluster: Chromosome 3 SCAF14932, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 3 SCAF14932, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 468

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = -1

Query: 266 TYLLCADRRN*MNFIKNKFRSRLTGEYL 183
           TYL C    + MNFIKNK R+RLT  +L
Sbjct: 414 TYL-CESAFSDMNFIKNKHRTRLTDAHL 440


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 356,229,090
Number of Sequences: 1657284
Number of extensions: 6229059
Number of successful extensions: 12482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12482
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15293670012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)