Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8i01
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   2.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.0  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   9.1  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
          protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 10 NIL*YCIHITHSH 48
          N+  +C+H+ HSH
Sbjct: 8  NLALFCLHVQHSH 20


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 11   IFCNIVYTLHTRIEFVHFKWEY 76
            +F  IV+ L  + +++H KW +
Sbjct: 1278 LFVLIVFLLTLKKDYLHIKWPF 1299


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 11   IFCNIVYTLHTRIEFVHFKWEY 76
            +F  IV+ L  + +++H KW +
Sbjct: 1278 LFVLIVFLLTLKKDYLHIKWPF 1299


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 156 LVA*VFSAIAAILWLKYCD 100
           L A V SAIA  L+L  CD
Sbjct: 5   LTACVGSAIAGFLFLLICD 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,651
Number of Sequences: 336
Number of extensions: 3289
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)