Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8i01
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336...    81   8e-16
02_05_0515 + 29689259-29689535,29689867-29690209,29690475-296907...    33   0.27 
01_01_0043 - 321810-321973,322054-322846                               31   0.63 
01_01_0044 - 326337-326500,326618-327398                               31   0.83 
01_01_0968 - 7618357-7618529,7618891-7619094,7620896-7621139,762...    31   1.1  
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791...    30   1.5  
11_06_0754 - 26935647-26937780,26940890-26941827                       29   3.3  
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834           29   4.4  
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698...    29   4.4  
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283...    28   5.9  
06_03_0019 + 15506702-15506896,15507741-15507875,15508264-155085...    28   5.9  
02_03_0383 + 18385109-18385307,18385431-18385516,18385565-183857...    28   7.7  

>02_05_1223 +
           35033273-35033353,35033455-35033539,35033613-35033683,
           35034400-35034531,35034654-35034769,35035128-35035251,
           35035349-35035417,35035508-35035628,35035707-35035843
          Length = 311

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 40/98 (40%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
 Frame = +2

Query: 350 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 529
           +G+Q+++P+RG     + LK+ GDLGQ++   Y+  D +SI   +  SNVVINL+GR+YE
Sbjct: 1   MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60

Query: 530 TKNFKYNDVHVDGVRRIARICREE-GVERFIHLSYLNA 640
           T+N+ +++V+     ++A I +E  G+ RFI +S L A
Sbjct: 61  TRNYGFDEVNHHMAEQLAMISKEHGGIMRFIQVSSLGA 98


>02_05_0515 +
           29689259-29689535,29689867-29690209,29690475-29690746,
           29691282-29691478,29691874-29692237,29692831-29692898
          Length = 506

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +2

Query: 461 EESIAKAVRYSNVVINLVGRDYETKNF----KYNDVHVDGVRRIARICREEGVERFIHLS 628
           +E + KA+R  + V +L       K      + ++V+++G   +   C E GV R +++S
Sbjct: 98  KEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHGVRRLVYVS 157

Query: 629 YLNAEEHPKPLV 664
             N     +P+V
Sbjct: 158 TYNVVFGGEPIV 169


>01_01_0043 - 321810-321973,322054-322846
          Length = 318

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = +2

Query: 257 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 424
           +GG  +       V G TG++GR+V     ++G   T L+      D   AQ L    D 
Sbjct: 3   SGGDQTTTKSRILVVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRDA 62

Query: 425 GQVLFTPYHLLDEESIAKAVRYSNVVINLV 514
           G  L     L D  S+ +AVR ++VVI+ V
Sbjct: 63  GVTLLHG-DLHDHASLLRAVRDADVVISAV 91


>01_01_0044 - 326337-326500,326618-327398
          Length = 314

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +2

Query: 257 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 424
           +GG    + I+  V G TG++GR+V     ++G   T L+      D   +Q L+   D 
Sbjct: 3   SGGEEKKSRIL--VVGGTGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRDA 60

Query: 425 GQVLFTPYHLLDEESIAKAVRYSNVVINLVG 517
           G  L     L D  S+  AVR ++VVI+ +G
Sbjct: 61  GVTLLHG-DLYDHASLLSAVRDADVVISTLG 90


>01_01_0968 -
           7618357-7618529,7618891-7619094,7620896-7621139,
           7623008-7623151,7623272-7623487
          Length = 326

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
 Frame = +2

Query: 257 TGGRSSFNGIVATVFGCTGFVGRYVCNK---LGKIGTQLILPYRGDF---YDAQRLKVCG 418
           T  + S N     V G TG +GR++       G     L+ P         D+ + K+  
Sbjct: 2   TKTKKSNNDSTILVIGGTGIIGRHIVAASLDAGHPTLVLVRPTAASAAVDVDSDKAKLLA 61

Query: 419 DLGQVLFTPYH--LLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARIC 592
            L     T  +  + D ES+  A+R ++VVI+ VG            V +DG  ++    
Sbjct: 62  SLVASGATIVYGDMNDRESLVAAIRQADVVISAVGH--------RGTVELDGQLKVVEAI 113

Query: 593 REEG-VERFIHLSY 631
           +E G V+RF+   Y
Sbjct: 114 KEAGNVKRFVPSEY 127


>12_01_0844 +
           7915121-7915225,7915724-7915777,7915888-7915968,
           7916164-7916209,7916311-7916405,7916581-7916613,
           7916941-7917286,7917372-7917511
          Length = 299

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 263 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDL 424
           GR+     VA V G +  +GR +   LGK G ++I+ Y     +A+  +VC ++
Sbjct: 3   GRAKLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAE--EVCREI 54


>11_06_0754 - 26935647-26937780,26940890-26941827
          Length = 1023

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 599 EGVERFIHLSYLNAEEHPKPLVL 667
           EG+++ + LSY N  EH KP VL
Sbjct: 446 EGIKQVLDLSYNNLSEHLKPCVL 468


>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
          Length = 939

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 361 LGTNFSQFVAHIASDKSGATENCGYDAVKATAATSTSLICCKVGF 227
           + ++FS   A+  SDK    EN G   + ++ +  TS    KVGF
Sbjct: 548 ISSSFSNMTANDHSDKLNVKENVGNTIIHSSRSVDTSNAEHKVGF 592


>07_03_1727 +
           29068348-29068571,29069473-29069514,29069593-29069839,
           29069936-29070013,29070551-29070736,29070829-29071126,
           29071775-29072244
          Length = 514

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 287 VATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK-VC--GDLGQVLFTPYHLL 457
           +A V G    +G  VC +L   G  +IL  R +      ++ +C   +L  ++F    +L
Sbjct: 90  LAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESNLSNIIFHQLDIL 149

Query: 458 DEESIAKAVRYSN 496
           D  S A   RY N
Sbjct: 150 DGNSRASLARYIN 162


>06_03_0052 -
           16027570-16027617,16027789-16027795,16028103-16028341,
           16028432-16028566,16028670-16028888
          Length = 215

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = +2

Query: 458 DEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLN 637
           D + + KAVR ++VVI++VG         Y+DV  + ++ IA I     ++RFI   + N
Sbjct: 78  DHDLLVKAVRAADVVISVVG---------YHDVG-EQMKIIAAIKEAGNIKRFIPSDFGN 127

Query: 638 AEEH 649
             +H
Sbjct: 128 DADH 131


>06_03_0019 +
           15506702-15506896,15507741-15507875,15508264-15508501,
           15508652-15508855,15508945-15509111
          Length = 312

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
 Frame = +2

Query: 296 VFGCTGFVGRYVCNKLGKIG--TQLIL--PYRGDFYDAQRLKVCGDLGQVLFTPYHLLDE 463
           V G TG++GRY+     +    T +++  P   D   A  L+   D G  L     L   
Sbjct: 13  VIGGTGYIGRYIVAASAREDHLTSVLVRDPAPADPAKAAVLQGFRDSGATL-VKGDLYGH 71

Query: 464 ESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLNAE 643
           +S+  A++ ++VVI+ VG         Y  +  D  R I+ I     V+RF    Y N  
Sbjct: 72  QSLVAAIKSADVVISAVG---------YAQL-ADQTRIISAIKEAGNVKRFFPSEYGNDV 121

Query: 644 EH 649
           +H
Sbjct: 122 DH 123


>02_03_0383 +
           18385109-18385307,18385431-18385516,18385565-18385765,
           18385894-18386058,18386168-18386494
          Length = 325

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/76 (23%), Positives = 38/76 (50%)
 Frame = +2

Query: 386 FYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVD 565
           FY+  R ++  ++G  + T  ++  E ++ KAV+   V++     D E ++ +     V 
Sbjct: 171 FYETLRAELGSEVGVTILTHGYVESEMTMGKAVQKDGVLV----VDQEARDVQIGVFPVG 226

Query: 566 GVRRIARICREEGVER 613
           GV  + R+   +G+ R
Sbjct: 227 GVGAMCRVAM-DGIRR 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,716,690
Number of Sequences: 37544
Number of extensions: 326592
Number of successful extensions: 719
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)