Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8h24
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262...    29   1.8  
02_03_0177 - 16017650-16019599                                         28   3.2  
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619...    26   9.7  

>11_06_0120 -
           20324794-20325204,20325416-20325545,20326172-20326255,
           20326584-20326823,20327418-20327498,20327761-20328113
          Length = 432

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 237 KCRLNQIAFHPSICRCQMIYGVF 305
           +CR   +  H S C+CQ++ G F
Sbjct: 223 QCRQKTLGHHTSCCKCQIVQGQF 245


>02_03_0177 - 16017650-16019599
          Length = 649

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 212 KWFSCEIA*MSLKPNRLSPVDM*MSNDIRSFCENVAID 325
           KW   E     +  NR  P ++  +  IRSFC+N  +D
Sbjct: 205 KWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLD 242


>01_03_0014 +
           11655216-11655287,11657833-11658048,11659848-11661912,
           11662966-11663013,11663081-11663328,11663429-11663558,
           11663707-11663983,11664102-11664180,11664311-11664397,
           11664586-11664618
          Length = 1084

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 320 LRHFRKNSVYHLTSTYRRVKG 258
           LR+F KN V+H+T+ Y  + G
Sbjct: 140 LRYFTKNEVWHITNGYSIMLG 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,678,730
Number of Sequences: 37544
Number of extensions: 113436
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)