Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8h24
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...    26   8.8  
AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    26   8.8  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 317 RHFRKNSVYHLTSTYRRVK-GDLV 249
           R FRK+ V HL++ Y + K GDLV
Sbjct: 17  RDFRKHGVEHLSTYYTQYKRGDLV 40


>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.10 protein.
          Length = 986

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 312 FSQKLRISFDIYISTGERRFGLSDIYAISQENHLRCRIWKKT 187
           F + L+    + IS G RRF    IY++ Q++++R R  K T
Sbjct: 637 FERTLKSRDPLIISCGWRRFQTIAIYSV-QDHNMRLRFLKYT 677


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,565,246
Number of Sequences: 27780
Number of extensions: 125464
Number of successful extensions: 235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)